Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BSR19_RS09705 Genome accession   NZ_CP018187
Coordinates   2105136..2106092 (-) Length   318 a.a.
NCBI ID   WP_138261573.1    Uniprot ID   A0AAW7PI86
Organism   Streptococcus salivarius strain ICDC2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100136..2111092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09675 (BSR19_09805) proC 2100674..2101444 (+) 771 WP_002885846.1 pyrroline-5-carboxylate reductase -
  BSR19_RS09680 (BSR19_09810) - 2101471..2102133 (-) 663 WP_111686674.1 CPBP family intramembrane glutamic endopeptidase -
  BSR19_RS09685 (BSR19_09815) - 2102246..2102692 (-) 447 WP_013991259.1 hypothetical protein -
  BSR19_RS09690 (BSR19_09820) - 2102770..2103426 (-) 657 WP_037601483.1 CPBP family intramembrane glutamic endopeptidase -
  BSR19_RS09695 (BSR19_09825) - 2103438..2103635 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  BSR19_RS09700 (BSR19_09830) - 2103886..2105079 (-) 1194 WP_138261572.1 acetate kinase -
  BSR19_RS09705 (BSR19_09835) comYH 2105136..2106092 (-) 957 WP_138261573.1 class I SAM-dependent methyltransferase Machinery gene
  BSR19_RS09710 (BSR19_09840) comGG 2106137..2106454 (-) 318 WP_156247046.1 competence type IV pilus minor pilin ComGG -
  BSR19_RS09715 (BSR19_09845) comYF 2106432..2106869 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR19_RS09720 (BSR19_09850) comGE 2106856..2107086 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  BSR19_RS09725 (BSR19_09855) comYD 2107118..2107546 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR19_RS09730 (BSR19_09860) comYC 2107506..2107832 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR19_RS09735 (BSR19_09865) comYB 2107829..2108929 (-) 1101 WP_156247047.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSR19_RS09740 (BSR19_09870) comYA 2108811..2109752 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR19_RS09745 (BSR19_09875) - 2109834..2110196 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35779.69 Da        Isoelectric Point: 4.3808

>NTDB_id=206875 BSR19_RS09705 WP_138261573.1 2105136..2106092(-) (comYH) [Streptococcus salivarius strain ICDC2]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKRNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=206875 BSR19_RS09705 WP_138261573.1 2105136..2106092(-) (comYH) [Streptococcus salivarius strain ICDC2]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGCGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGGTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAGACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTAACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTGTCAGGCTATGCTGATATTATTGCAGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACGTAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment