Detailed information NTG0206876

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BSR19_RS09715
• Genome accession: NZ_CP018187
• Coordinates: 2106432..2106869 (-)
• Length: 145 a.a.
• NCBI ID: WP_045769383.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ICDC2
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2101432..2111869

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR19_RS09680 (BSR19_09810)	-	2101471..2102133 (-)	663	WP_111686674.1	CPBP family intramembrane glutamic endopeptidase	-
BSR19_RS09685 (BSR19_09815)	-	2102246..2102692 (-)	447	WP_013991259.1	hypothetical protein	-
BSR19_RS09690 (BSR19_09820)	-	2102770..2103426 (-)	657	WP_037601483.1	CPBP family intramembrane glutamic endopeptidase	-
BSR19_RS09695 (BSR19_09825)	-	2103438..2103635 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
BSR19_RS09700 (BSR19_09830)	-	2103886..2105079 (-)	1194	WP_138261572.1	acetate kinase	-
BSR19_RS09705 (BSR19_09835)	comYH	2105136..2106092 (-)	957	WP_138261573.1	class I SAM-dependent methyltransferase	Machinery gene
BSR19_RS09710 (BSR19_09840)	comGG	2106137..2106454 (-)	318	WP_156247046.1	competence type IV pilus minor pilin ComGG	-
BSR19_RS09715 (BSR19_09845)	comYF	2106432..2106869 (-)	438	WP_045769383.1	competence type IV pilus minor pilin ComGF	Machinery gene
BSR19_RS09720 (BSR19_09850)	comGE	2106856..2107086 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
BSR19_RS09725 (BSR19_09855)	comYD	2107118..2107546 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
BSR19_RS09730 (BSR19_09860)	comYC	2107506..2107832 (-)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
BSR19_RS09735 (BSR19_09865)	comYB	2107829..2108929 (-)	1101	WP_156247047.1	competence type IV pilus assembly protein ComGB	Machinery gene
BSR19_RS09740 (BSR19_09870)	comYA	2108811..2109752 (-)	942	WP_002885658.1	competence type IV pilus ATPase ComGA	Machinery gene
BSR19_RS09745 (BSR19_09875)	-	2109834..2110196 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16182.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=206876 BSR19_RS09715 WP_045769383.1 2106432..2106869(-) (comYF) [Streptococcus salivarius strain ICDC2]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=206876 BSR19_RS09715 WP_045769383.1 2106432..2106869(-) (comYF) [Streptococcus salivarius strain ICDC2]
ATGTCTCTCAATAGCAAGGTTCGTGCTTTTACCCTCTTGGAATGTCTAGTAGCTCTATTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTCCTAT
TTGTCCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTGGTAAAGGTAGAAGGGAACAAGCTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGCCTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAAGCTAGTACAATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae D39	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae R6	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50	97.931	0.49
comGF/cglF	Streptococcus mitis SK321	47.222	99.31	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.222	99.31	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434