Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BOP93_RS01970 Genome accession   NZ_CP018049
Coordinates   455875..457200 (+) Length   441 a.a.
NCBI ID   WP_104505232.1    Uniprot ID   A0A2L0S422
Organism   Pseudomonas orientalis strain F9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450875..462200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS01950 (BOP93_01875) - 450952..453417 (-) 2466 WP_104501362.1 penicillin-binding protein 1A -
  BOP93_RS01955 (BOP93_01880) pilM 453633..454289 (+) 657 WP_065885701.1 type IV pilus assembly protein PilM -
  BOP93_RS01960 (BOP93_01885) - 454286..454837 (+) 552 WP_104501363.1 PilN domain-containing protein -
  BOP93_RS01965 (BOP93_01890) - 454834..455805 (+) 972 WP_104501364.1 pilus assembly protein PilP -
  BOP93_RS01970 (BOP93_01895) pilQ 455875..457200 (+) 1326 WP_104505232.1 type IV pilus secretin PilQ family protein Machinery gene
  BOP93_RS01975 (BOP93_01900) aroK 457205..457723 (+) 519 WP_065885698.1 shikimate kinase AroK -
  BOP93_RS01980 (BOP93_01905) aroB 457849..458949 (+) 1101 WP_065885697.1 3-dehydroquinate synthase -
  BOP93_RS01985 (BOP93_01910) - 458960..460534 (+) 1575 WP_104501365.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47884.71 Da        Isoelectric Point: 4.9355

>NTDB_id=205347 BOP93_RS01970 WP_104505232.1 455875..457200(+) (pilQ) [Pseudomonas orientalis strain F9]
MAAAVPNRVDLIHLPPPESTSSADYTGDTLNLNFQNIDLRAALQQIADVAGLNLVAADEVQGSITLRLKDVPWDQALDLV
LQAKGLDKRVKAGVLLVAPADELAARELLTLEARKQMAELAPLRRELLQVNYAKAADLAKLFQSMAGFEGATDERGSVAV
DDRTNNIIAYQTAERLQELRRIVAQLDVPVRQVMIEARIVEANVDYDKSLGVRWGGRLNRGNWGAGGISKPPADGAQPPQ
NPPSSPFVDLGSLTGTSGLGLAFITDNLLLDLELTAMEKSGNGEIVSQPKVVTSDKETARILKGTEIPYQESTSQGATSV
SFKEASLSLEVTPQITPDDHVIMVVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVLDKVPF
LGDVPYLGRLFRRDVRSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=205347 BOP93_RS01970 WP_104505232.1 455875..457200(+) (pilQ) [Pseudomonas orientalis strain F9]
ATGGCTGCTGCTGTGCCCAATCGCGTCGACCTTATCCATCTGCCGCCGCCTGAAAGCACGTCGTCGGCCGACTACACAGG
CGACACACTGAACCTTAATTTCCAGAACATCGATTTGCGCGCGGCATTGCAGCAAATCGCCGATGTCGCCGGGCTGAACC
TGGTGGCCGCAGACGAGGTGCAGGGTTCGATCACCCTGCGGCTCAAGGACGTGCCCTGGGACCAGGCGCTGGACCTGGTG
TTGCAAGCCAAGGGGTTGGACAAGCGGGTCAAGGCCGGCGTCTTGCTGGTGGCCCCCGCCGACGAATTGGCCGCACGCGA
ACTGCTGACGCTGGAGGCGCGCAAGCAGATGGCCGAACTGGCGCCGTTGCGCCGGGAGTTGCTGCAGGTCAATTACGCCA
AGGCGGCGGACCTGGCCAAGCTGTTCCAGTCCATGGCCGGCTTTGAAGGCGCGACCGACGAGCGCGGCTCGGTGGCGGTG
GATGATCGCACCAACAATATCATCGCCTACCAGACCGCAGAGCGGCTGCAAGAGCTGCGGCGGATCGTGGCGCAGTTGGA
CGTCCCGGTGCGCCAGGTGATGATCGAGGCGCGCATTGTCGAGGCCAATGTCGATTACGACAAAAGCCTGGGCGTGCGCT
GGGGTGGGCGGCTCAATCGCGGCAATTGGGGCGCCGGCGGTATTTCAAAACCCCCGGCAGATGGCGCGCAGCCACCGCAG
AATCCACCCAGTTCACCCTTTGTCGATTTGGGTTCGCTGACCGGCACCTCGGGTCTGGGGCTGGCGTTTATCACCGACAA
CCTGCTGCTGGACCTTGAGCTGACCGCCATGGAAAAGTCCGGCAACGGCGAAATCGTCTCGCAGCCCAAGGTGGTCACCT
CGGACAAGGAAACCGCGCGCATTCTCAAGGGCACCGAGATTCCCTACCAGGAATCCACGTCCCAGGGCGCCACCTCGGTG
TCGTTCAAGGAAGCTTCGCTGTCGTTGGAGGTCACGCCGCAGATCACCCCCGACGATCATGTGATCATGGTGGTCAAAGT
CACCAAGGACGAACCCGACTATTTGAACAAACTCAACGACGTGCCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCC
TGGTCAAGGATGGCGAGACCATTGTCATCGGCGGGGTTTTCTCCAATACCCAGAGCAAAGTGCTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCGGTCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Secretin and TonB N terminus short domain (STN)

(54-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0S422

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

68.934

100

0.689
  pilQ Acinetobacter baumannii D1279779

41.505

100

0.438
  pilQ Acinetobacter baumannii strain A118

41.505

100

0.438
  comQ Acinetobacter baylyi ADP1

42.105

100

0.435
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.657

97.279

0.415
  pilQ Vibrio cholerae strain A1552

42.657

97.279

0.415
  pilQ Legionella pneumophila strain Lp02

43.333

95.238

0.413
  pilQ Vibrio campbellii strain DS40M4

41.958

97.279

0.408
  pilQ Legionella pneumophila strain ERS1305867

42.857

95.238

0.408

Multiple sequence alignment