Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | K08M4_RS10365 | Genome accession | NZ_CP017916 |
| Coordinates | 2264158..2264457 (-) | Length | 99 a.a. |
| NCBI ID | WP_086049805.1 | Uniprot ID | - |
| Organism | Vibrio syngnathi strain K08M4 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2259158..2269457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M4_RS10335 (K08M4_20780) | - | 2259437..2260669 (+) | 1233 | WP_086049800.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K08M4_RS10345 (K08M4_20790) | yfbR | 2261001..2261585 (+) | 585 | WP_086049801.1 | 5'-deoxynucleotidase | - |
| K08M4_RS10350 (K08M4_20800) | - | 2261640..2262983 (+) | 1344 | WP_086049802.1 | anti-phage deoxyguanosine triphosphatase | - |
| K08M4_RS10355 (K08M4_20810) | - | 2263010..2263609 (-) | 600 | WP_086049803.1 | DTW domain-containing protein | - |
| K08M4_RS10360 (K08M4_20820) | rrtA | 2263619..2264167 (+) | 549 | WP_086049804.1 | rhombosortase | - |
| K08M4_RS10365 (K08M4_20830) | comEA | 2264158..2264457 (-) | 300 | WP_086049805.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| K08M4_RS10370 (K08M4_20840) | ppiD | 2264684..2266549 (-) | 1866 | WP_086049806.1 | peptidylprolyl isomerase | - |
| K08M4_RS10375 (K08M4_20850) | - | 2266769..2267062 (-) | 294 | WP_012604504.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10794.38 Da Isoelectric Point: 4.5881
>NTDB_id=204065 K08M4_RS10365 WP_086049805.1 2264158..2264457(-) (comEA) [Vibrio syngnathi strain K08M4]
MRTIYSTLLLSFLMTLSSPALSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDKNGVFMTADDLV
SVKGIGEATVKKNRERIQL
MRTIYSTLLLSFLMTLSSPALSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDKNGVFMTADDLV
SVKGIGEATVKKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=204065 K08M4_RS10365 WP_086049805.1 2264158..2264457(-) (comEA) [Vibrio syngnathi strain K08M4]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGACCCTGAGCTCCCCTGCGCTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAGATTACGGTCAACATCAATACCGCGACAGCAGAAGAGCTGTCAGCACTATTGGTTG
GTGTGGGGGATAAGAAAGCCCAAGAGATCGTCGATTACAGAGATAAAAACGGTGTATTTATGACTGCTGATGATTTGGTG
AGTGTCAAAGGGATAGGTGAAGCCACGGTTAAAAAGAACCGCGAAAGAATTCAGCTTTGA
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGACCCTGAGCTCCCCTGCGCTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATTGAGATTACGGTCAACATCAATACCGCGACAGCAGAAGAGCTGTCAGCACTATTGGTTG
GTGTGGGGGATAAGAAAGCCCAAGAGATCGTCGATTACAGAGATAAAAACGGTGTATTTATGACTGCTGATGATTTGGTG
AGTGTCAAAGGGATAGGTGAAGCCACGGTTAAAAAGAACCGCGAAAGAATTCAGCTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
52.941 |
100 |
0.545 |
| comEA | Vibrio cholerae strain A1552 |
52.941 |
100 |
0.545 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
56.522 |
92.929 |
0.525 |
| comEA | Vibrio campbellii strain DS40M4 |
55.435 |
92.929 |
0.515 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40 |
100 |
0.444 |
| comEA | Acinetobacter baylyi ADP1 |
48.78 |
82.828 |
0.404 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60.606 |
0.364 |
| comEA | Legionella pneumophila str. Paris |
35.294 |
100 |
0.364 |
| comEA | Legionella pneumophila strain ERS1305867 |
35.294 |
100 |
0.364 |