Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BK049_RS19820 Genome accession   NZ_CP017786
Coordinates   2158596..2158952 (+) Length   118 a.a.
NCBI ID   WP_237739228.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2153596..2163952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS10860 (BK049_10860) degU 2154668..2155357 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BK049_RS10865 (BK049_10865) - 2155570..2156412 (+) 843 WP_071168501.1 DegV family protein -
  BK049_RS10870 (BK049_10870) comFA 2156532..2157911 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  BK049_RS10875 (BK049_10875) - 2157976..2158269 (+) 294 WP_008360197.1 competence protein ComFB -
  BK049_RS19975 - 2158266..2158433 (+) 168 Protein_2117 double zinc ribbon domain-containing protein -
  BK049_RS19820 comFC 2158596..2158952 (+) 357 WP_237739228.1 phosphoribosyltransferase family protein Machinery gene
  BK049_RS10885 (BK049_10885) - 2159009..2159428 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  BK049_RS10890 (BK049_10890) flgM 2159508..2159771 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BK049_RS10895 (BK049_10895) - 2159790..2160272 (+) 483 WP_008360191.1 flagellar protein FlgN -
  BK049_RS10900 (BK049_10900) flgK 2160288..2161808 (+) 1521 WP_008360189.1 flagellar hook-associated protein FlgK -
  BK049_RS10905 (BK049_10905) flgL 2161817..2162728 (+) 912 WP_008360187.1 flagellar hook-associated protein FlgL -
  BK049_RS10910 (BK049_10910) - 2162776..2163354 (+) 579 WP_008360185.1 DUF6470 family protein -
  BK049_RS10915 (BK049_10915) fliW 2163383..2163817 (+) 435 WP_008360183.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13292.72 Da        Isoelectric Point: 11.0501

>NTDB_id=202945 BK049_RS19820 WP_237739228.1 2158596..2158952(+) (comFC) [Bacillus xiamenensis strain VV3]
MFKRSFSIKEPVLVPIPLSKERLKERGFNQSVMLASMIGGPIFQPLIKVHQRKQSKKSKNDRLNQKGLFQLKQPDPIVLK
DVILVDDIYTTGATVYHAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 357 bp        

>NTDB_id=202945 BK049_RS19820 WP_237739228.1 2158596..2158952(+) (comFC) [Bacillus xiamenensis strain VV3]
GTGTTTAAACGCTCTTTTTCAATCAAAGAGCCTGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGGCTAAAGGAAAGAGG
ATTCAATCAGTCGGTAATGCTTGCTTCCATGATTGGTGGACCTATATTCCAGCCACTCATTAAAGTACATCAAAGGAAGC
AGTCAAAGAAAAGCAAAAATGATCGTTTAAATCAAAAGGGTTTGTTCCAATTAAAACAGCCAGATCCGATCGTTCTAAAG
GATGTCATATTAGTTGATGATATTTATACAACCGGGGCGACAGTCTACCATGCGGCAAGAATTTTAAAAGACGCAGGTGC
CAAAAGCGTTTCCTCTTTTACGTTGATTCGCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(79-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.695

100

0.517
  comFC/cflB Streptococcus mitis NCTC 12261

43.119

92.373

0.398
  comFC/cflB Streptococcus mitis SK321

42.202

92.373

0.39
  comFC Lactococcus lactis subsp. cremoris KW2

42.857

88.983

0.381
  comFC/cflB Streptococcus pneumoniae D39

41.284

92.373

0.381
  comFC/cflB Streptococcus pneumoniae R6

41.284

92.373

0.381
  comFC/cflB Streptococcus pneumoniae TIGR4

41.284

92.373

0.381
  comFC/cflB Streptococcus pneumoniae Rx1

41.284

92.373

0.381

Multiple sequence alignment