Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BK049_RS10860 Genome accession   NZ_CP017786
Coordinates   2154668..2155357 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus xiamenensis strain VV3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2149668..2160357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS18890 - 2150710..2151349 (-) 640 Protein_2109 IS3 family transposase -
  BK049_RS10845 (BK049_10845) - 2151464..2152555 (-) 1092 WP_008360210.1 LCP family protein -
  BK049_RS10850 (BK049_10850) - 2152540..2153208 (-) 669 WP_008360208.1 YigZ family protein -
  BK049_RS10855 (BK049_10855) degS 2153428..2154603 (+) 1176 WP_008360205.1 sensor histidine kinase Regulator
  BK049_RS10860 (BK049_10860) degU 2154668..2155357 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BK049_RS10865 (BK049_10865) - 2155570..2156412 (+) 843 WP_071168501.1 DegV family protein -
  BK049_RS10870 (BK049_10870) comFA 2156532..2157911 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  BK049_RS10875 (BK049_10875) - 2157976..2158269 (+) 294 WP_008360197.1 competence protein ComFB -
  BK049_RS19975 - 2158266..2158433 (+) 168 Protein_2117 double zinc ribbon domain-containing protein -
  BK049_RS19820 comFC 2158596..2158952 (+) 357 WP_237739228.1 phosphoribosyltransferase family protein Machinery gene
  BK049_RS10885 (BK049_10885) - 2159009..2159428 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  BK049_RS10890 (BK049_10890) flgM 2159508..2159771 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BK049_RS10895 (BK049_10895) - 2159790..2160272 (+) 483 WP_008360191.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=202922 BK049_RS10860 WP_008348273.1 2154668..2155357(+) (degU) [Bacillus xiamenensis strain VV3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=202922 BK049_RS10860 WP_008348273.1 2154668..2155357(+) (degU) [Bacillus xiamenensis strain VV3]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGCATCGTAGAGCACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAACTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCTTGTCTATTCATGACGATGAAAACTATGTGACACATGCTTTAAAGACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTGAAAGTAGTAGCTGACGGAGGTTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
CGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CACAAGCTGTTGTTGTAGCGATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment