Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BK049_RS10870 Genome accession   NZ_CP017786
Coordinates   2156532..2157911 (+) Length   459 a.a.
NCBI ID   WP_145939407.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2151532..2162911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS10850 (BK049_10850) - 2152540..2153208 (-) 669 WP_008360208.1 YigZ family protein -
  BK049_RS10855 (BK049_10855) degS 2153428..2154603 (+) 1176 WP_008360205.1 sensor histidine kinase Regulator
  BK049_RS10860 (BK049_10860) degU 2154668..2155357 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BK049_RS10865 (BK049_10865) - 2155570..2156412 (+) 843 WP_071168501.1 DegV family protein -
  BK049_RS10870 (BK049_10870) comFA 2156532..2157911 (+) 1380 WP_145939407.1 DEAD/DEAH box helicase Machinery gene
  BK049_RS10875 (BK049_10875) - 2157976..2158269 (+) 294 WP_008360197.1 competence protein ComFB -
  BK049_RS19975 - 2158266..2158433 (+) 168 Protein_2117 double zinc ribbon domain-containing protein -
  BK049_RS19820 comFC 2158596..2158952 (+) 357 WP_237739228.1 phosphoribosyltransferase family protein Machinery gene
  BK049_RS10885 (BK049_10885) - 2159009..2159428 (+) 420 WP_008360193.1 TIGR03826 family flagellar region protein -
  BK049_RS10890 (BK049_10890) flgM 2159508..2159771 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BK049_RS10895 (BK049_10895) - 2159790..2160272 (+) 483 WP_008360191.1 flagellar protein FlgN -
  BK049_RS10900 (BK049_10900) flgK 2160288..2161808 (+) 1521 WP_008360189.1 flagellar hook-associated protein FlgK -
  BK049_RS10905 (BK049_10905) flgL 2161817..2162728 (+) 912 WP_008360187.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52647.45 Da        Isoelectric Point: 10.1188

>NTDB_id=202923 BK049_RS10870 WP_145939407.1 2156532..2157911(+) (comFA) [Bacillus xiamenensis strain VV3]
MNMKKALELRQQLQSRHLLAFECQCTQSDLDWLEKQGFIDRTHAIERESIGLICCRCGVSNKRYFARSPCETCQKDCLYC
RSCIMMGKVTECGFLYEWTGPHKEETIQAELTWQGELSKGQKRASKRMVEAIKNTSDLLVWAVCGAGKTEVLFHGIEYAL
NKGMSVCIATPRTDVVLELEPRIRKAFQGLDIAALYGGSPQRFQIAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVVKAMKKTGVRIYLSATPSKKMKKDVVRGQLEAVKIPLRFHQQPLPVPAFQWIGQWRKKLKKNRLPSITMNWLQE
HIKKKKRVLLFVPSISTMKRVTQILRAHHVNVQGVSADDQDRKQKVQHFREHRYDVLVTTTILERGVTIRDVQVGVLGAE
STIFTESALVQISGRAGRHPEYAKGDVFFFHFGLTRSMKKAKKHIEQMNTVAKQEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=202923 BK049_RS10870 WP_145939407.1 2156532..2157911(+) (comFA) [Bacillus xiamenensis strain VV3]
TTGAACATGAAGAAAGCGCTGGAACTCCGGCAGCAGCTCCAATCACGACACCTTCTTGCTTTTGAATGTCAATGTACACA
GTCTGATTTGGATTGGCTGGAGAAGCAAGGATTTATTGATAGAACACACGCCATTGAAAGAGAATCGATTGGTTTAATAT
GCTGTCGATGCGGTGTATCAAATAAACGATATTTTGCCCGCTCACCGTGTGAAACATGTCAAAAAGACTGTCTATACTGT
AGATCTTGCATCATGATGGGTAAAGTAACTGAATGTGGTTTCCTCTATGAATGGACGGGTCCGCACAAGGAAGAAACAAT
CCAAGCTGAATTGACATGGCAGGGAGAGCTGTCTAAAGGACAAAAGAGGGCGTCAAAAAGAATGGTAGAAGCGATAAAAA
ACACATCTGATTTACTGGTTTGGGCTGTTTGCGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATTGAATATGCGTTA
AATAAAGGAATGAGTGTCTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAACTCGAACCACGAATTAGAAAGGCATT
CCAAGGGCTTGATATAGCTGCACTTTATGGCGGAAGTCCTCAAAGATTTCAAATAGCACCGCTAATGATTGCCACAACCC
ATCAACTGATGAGATACAAAAATGCTTTTGATGTCCTCATAGTAGATGAAGTCGATGCCTTTCCTTATTCAATTGATGAA
CGTCTTCAATTTGCTGTTGTTAAGGCCATGAAGAAAACAGGAGTTAGGATTTATTTAAGTGCCACGCCATCTAAAAAAAT
GAAAAAGGATGTGGTTCGTGGACAATTAGAAGCGGTAAAAATTCCTTTGCGTTTTCACCAACAACCGTTGCCTGTCCCAG
CATTTCAATGGATTGGACAATGGAGAAAGAAATTAAAAAAGAATCGGCTGCCATCTATTACAATGAACTGGCTGCAGGAA
CATATCAAAAAGAAAAAAAGGGTTTTACTTTTTGTCCCTTCTATTTCTACTATGAAGAGGGTCACGCAGATCCTTCGAGC
ACATCATGTAAATGTACAGGGTGTTTCTGCCGATGATCAAGATAGGAAACAAAAGGTTCAACACTTCAGAGAGCATAGAT
ATGATGTTCTAGTTACAACAACAATTCTAGAAAGAGGCGTCACCATTCGAGATGTTCAGGTGGGTGTGTTAGGTGCAGAA
TCTACTATTTTTACAGAGAGTGCGCTTGTTCAGATTTCTGGCAGGGCTGGCAGACATCCTGAATACGCTAAAGGAGATGT
GTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAAAAAGCGAAGAAGCACATCGAACAAATGAACACGGTGGCTAAAC
AGGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(318-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.933

96.95

0.523

Multiple sequence alignment