Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BKX93_RS09960 Genome accession   NZ_CP017707
Coordinates   2132764..2133987 (-) Length   407 a.a.
NCBI ID   WP_046168367.1    Uniprot ID   A0A1D9LGA3
Organism   Chromobacterium vaccinii strain 21-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127764..2138987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKX93_RS09930 (BKX93_09930) tsaE 2128492..2128986 (+) 495 WP_046155582.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  BKX93_RS09935 (BKX93_09935) - 2128944..2130185 (+) 1242 WP_021479157.1 N-acetylmuramoyl-L-alanine amidase -
  BKX93_RS09940 (BKX93_09940) yacG 2130253..2130444 (-) 192 WP_046168374.1 DNA gyrase inhibitor YacG -
  BKX93_RS09945 (BKX93_09945) zapD 2130450..2131208 (-) 759 WP_031297029.1 cell division protein ZapD -
  BKX93_RS09950 (BKX93_09950) coaE 2131245..2131859 (-) 615 WP_046155583.1 dephospho-CoA kinase -
  BKX93_RS09955 (BKX93_09955) - 2131844..2132764 (-) 921 WP_046168368.1 A24 family peptidase -
  BKX93_RS09960 (BKX93_09960) pilC 2132764..2133987 (-) 1224 WP_046168367.1 type II secretion system F family protein Machinery gene
  BKX93_RS09965 (BKX93_09965) pilF 2134025..2135731 (-) 1707 WP_070979662.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BKX93_RS09970 (BKX93_09970) - 2135900..2137021 (-) 1122 WP_046155587.1 porin -
  BKX93_RS09975 (BKX93_09975) - 2137420..2137740 (-) 321 WP_070979663.1 helix-hairpin-helix domain-containing protein -
  BKX93_RS09980 (BKX93_09980) ccsA 2137807..2138628 (-) 822 WP_046155588.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44944.76 Da        Isoelectric Point: 10.0197

>NTDB_id=202138 BKX93_RS09960 WP_046168367.1 2132764..2133987(-) (pilC) [Chromobacterium vaccinii strain 21-1]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESETVAKTQLRRQGINVAKIRRRRSGFGKRITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHGNPAVTRMLLEVRADVETGLSLAESFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAIFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQSDVSTG
SSLSYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=202138 BKX93_RS09960 WP_046168367.1 2132764..2133987(-) (pilC) [Chromobacterium vaccinii strain 21-1]
ATGGCGACCACGGCGGCCAAGAAAGCGAATCCAGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAACTGCGCGCCGAGTCCGAGACTGTCGCCAAGACCCAGCTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GTCGCCGTCGCAGCGGTTTCGGCAAGAGAATCACCGAGAAGGACATCACGCTGTTCACCCGCCAGTTGTCGACGATGATG
CGGGCTGGCGTGCCGCTGCTGCAGGCTTTCGACATCGCGGCCAAAGGGCACGGCAATCCGGCGGTGACGCGGATGCTGCT
GGAAGTGAGGGCGGATGTCGAAACCGGCCTGTCGCTGGCGGAGTCGTTCCGCAAGCGTCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCCGCCGGCGAGGCGGGCGGCGTGCTGGACACCTTGCTGGACAAACTGGCCACCTACAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAATCGGCGATGATCTATCCTTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTGATCATGATTTACGTGATCCCGGCGTTCAAGGACCTGTTTTCCAGCTTCGGCGCCAACCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCCGATCAATTCGTCCATTTCTGGTGGCTGATCTTCGGCACCCTGTTCGGCGCGATTTTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAAGATGCAGGAGCAGATGGACCGCATTCTGCTGCGGCTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACGTTGTCGACGCTGTTCTCCGCCGGGGTGCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGCGCCGCGGGCAACCAGGTTTACGCCGAGGCGACGCGGCGCATCCAGTCCGACGTCAGCACCGGC
TCCAGCCTCAGCTATTCGATGCAGCGCACCGATCTGTTTCCCAATATGGTGCTGCAGATGACCTCGATCGGCGAGGAGTC
GGGCTCGCTGGACCAGATGCTGGACAAGGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGTTGTCCA
GTCTGCTGGAGCCGGCGATCATGGTGATACTGGGTATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9LGA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.218

99.263

0.528
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.263

0.526
  pilG Neisseria gonorrhoeae MS11

53.197

96.069

0.511
  pilG Neisseria meningitidis 44/76-A

53.197

96.069

0.511
  pilC Acinetobacter baylyi ADP1

49.386

100

0.494
  pilC Acinetobacter baumannii D1279779

48.649

100

0.486
  pilC Vibrio campbellii strain DS40M4

37.26

100

0.381
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361

Multiple sequence alignment