Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SPG_0677 Genome accession   CP001015
Coordinates   661553..661996 (+) Length   147 a.a.
NCBI ID   ACF56558.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 660194..671897 661553..661996 within 0


Gene organization within MGE regions


Location: 660194..671897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0675 - 660194..660661 (+) 468 ACF56365.1 cytidine and deoxycytidylate deaminase family protein -
  SPG_0676 upp 660729..661379 (+) 651 ACF56075.1 uracil phosphoribosyltransferase -
  SPG_0677 clpP 661553..661996 (+) 444 ACF56558.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SPG_0678 clpP 662013..662144 (+) 132 ACF55790.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SPG_0679 - 662223..662471 (+) 249 ACF55168.1 hypothetical protein -
  SPG_0680 livJ 662572..663732 (+) 1161 ACF56703.1 ABC-type branched-chain amino acid transport systems, periplasmic component -
  SPG_0681 livH 664000..664869 (+) 870 ACF55977.1 branched-chain amino acid ABC transporter, permease protein -
  SPG_0682 livM 664873..665829 (+) 957 ACF55527.1 branched-chain amino acid ABC transporter, permease protein -
  SPG_0683 livG 665829..666593 (+) 765 ACF54774.1 branched-chain amino acid ABC transporter, ATP-binding protein -
  SPG_0684 livF 666593..667303 (+) 711 ACF55963.1 branched-chain amino acid ABC transporter, ATP-binding protein -
  SPG_0685 - 667611..668267 (+) 657 ACF56359.1 acetoin utilization protein AcuB, putative -
  SPG_0686 - 668481..669470 (+) 990 ACF55623.1 peptide chain release factor 2 -
  SPG_0687 ftsE 669488..670180 (+) 693 ACF55126.1 cell division ATP-binding protein FtsE -
  SPG_0688 - 670173..671099 (+) 927 ACF55211.1 Cell division protein FtsX -
  SPG_0689 - 671385..671897 (+) 513 ACF56757.1 PTS system, IIBCA components -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15764.99 Da        Isoelectric Point: 5.6705

>NTDB_id=20186 SPG_0677 ACF56558.1 661553..661996(+) (clpP) [Streptococcus pneumoniae G54]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVXTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKNS

Nucleotide


Download         Length: 444 bp        

>NTDB_id=20186 SPG_0677 ACF56558.1 661553..661996(+) (clpP) [Streptococcus pneumoniae G54]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTANATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGAACAGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCATCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAAATTCGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

99.31

98.639

0.98
  clpP Streptococcus pneumoniae D39

99.31

98.639

0.98
  clpP Streptococcus pneumoniae R6

99.31

98.639

0.98
  clpP Streptococcus pneumoniae TIGR4

99.31

98.639

0.98
  clpP Streptococcus pyogenes JRS4

97.931

98.639

0.966
  clpP Streptococcus pyogenes MGAS315

97.931

98.639

0.966
  clpP Streptococcus thermophilus LMG 18311

95.172

98.639

0.939
  clpP Streptococcus thermophilus LMD-9

95.172

98.639

0.939
  clpP Streptococcus mutans UA159

92.414

98.639

0.912
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

88.966

98.639

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

88.276

98.639

0.871
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.069

98.639

0.612
  clpP Bacillus subtilis subsp. subtilis str. 168

61.806

97.959

0.605

Multiple sequence alignment