Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LT090_RS02830 | Genome accession | NZ_CP017689 |
| Coordinates | 632968..634221 (-) | Length | 417 a.a. |
| NCBI ID | WP_082897042.1 | Uniprot ID | - |
| Organism | Thalassotalea crassostreae strain LPB0090 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 627968..639221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT090_RS02805 | - | 628857..629321 (+) | 465 | WP_068544850.1 | hypothetical protein | - |
| LT090_RS02810 | yacG | 629595..629831 (-) | 237 | WP_068544848.1 | DNA gyrase inhibitor YacG | - |
| LT090_RS02815 | - | 629979..630725 (-) | 747 | WP_068544846.1 | cell division protein ZapD | - |
| LT090_RS02820 | coaE | 631099..631707 (-) | 609 | WP_068545045.1 | dephospho-CoA kinase | - |
| LT090_RS02825 | pilD | 631897..632790 (-) | 894 | WP_068544844.1 | prepilin peptidase | Machinery gene |
| LT090_RS02830 | pilC | 632968..634221 (-) | 1254 | WP_082897042.1 | type II secretion system F family protein | Machinery gene |
| LT090_RS02835 | pilB | 634304..636007 (-) | 1704 | WP_415918826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LT090_RS17240 | - | 636120..636509 (-) | 390 | WP_269466066.1 | pilin | - |
| LT090_RS02845 | nadC | 637107..638000 (-) | 894 | WP_068544840.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| LT090_RS02850 | - | 638043..638564 (-) | 522 | WP_415918824.1 | TIGR02281 family clan AA aspartic protease | - |
Sequence
Protein
Download Length: 417 a.a. Molecular weight: 45187.11 Da Isoelectric Point: 8.8053
>NTDB_id=201802 LT090_RS02830 WP_082897042.1 632968..634221(-) (pilC) [Thalassotalea crassostreae strain LPB0090]
MAVQGAQQKMVKPKPLEQFQWEGVNRKGKKIKGELSATNMNELKAQLRKQGITPLKTKKKPKPLFGLGGSKDKKITPKDI
ATITRQIATMLGAGVPLVQTIEMIGRGNDNGNIRKLLSDIGNKVQSGLPLSECLREHPKFFDDLYCDLVQSGEQSGALET
IFDRIAIYKEKAEALKSKIKKALNYPIAVILIAAIVTSILLIKVVPTFAEIFEGFGAELPAFTQFIVAISDNMVAYWHLA
LGAIIAAGWAFKRAYANSQDLRDKVDAFQLKIPVIGMIMDKAAVARFARTLSTTFAAGVPLIDALDSAAGASGNAVYRDA
IQDIRSEVSAGMQMNLAMRNVDVFPDMVVQMVTIGEESGALDDMLAKVANIYEQEVDDLVDGLTALLEPMIMAVLGVVIG
GLIIGMYLPIFAMGSII
MAVQGAQQKMVKPKPLEQFQWEGVNRKGKKIKGELSATNMNELKAQLRKQGITPLKTKKKPKPLFGLGGSKDKKITPKDI
ATITRQIATMLGAGVPLVQTIEMIGRGNDNGNIRKLLSDIGNKVQSGLPLSECLREHPKFFDDLYCDLVQSGEQSGALET
IFDRIAIYKEKAEALKSKIKKALNYPIAVILIAAIVTSILLIKVVPTFAEIFEGFGAELPAFTQFIVAISDNMVAYWHLA
LGAIIAAGWAFKRAYANSQDLRDKVDAFQLKIPVIGMIMDKAAVARFARTLSTTFAAGVPLIDALDSAAGASGNAVYRDA
IQDIRSEVSAGMQMNLAMRNVDVFPDMVVQMVTIGEESGALDDMLAKVANIYEQEVDDLVDGLTALLEPMIMAVLGVVIG
GLIIGMYLPIFAMGSII
Nucleotide
Download Length: 1254 bp
>NTDB_id=201802 LT090_RS02830 WP_082897042.1 632968..634221(-) (pilC) [Thalassotalea crassostreae strain LPB0090]
ATGGCAGTTCAAGGCGCACAACAAAAAATGGTAAAACCTAAACCGTTGGAACAATTTCAGTGGGAAGGAGTGAACCGTAA
AGGTAAAAAAATTAAAGGTGAATTGTCCGCTACTAATATGAATGAGCTCAAAGCTCAACTTCGTAAACAAGGCATTACAC
CTCTAAAAACCAAGAAAAAACCTAAGCCTTTATTTGGTTTGGGCGGCAGCAAAGATAAAAAAATAACGCCGAAAGATATT
GCTACCATTACCCGTCAAATAGCGACTATGTTGGGTGCTGGTGTGCCGTTAGTGCAAACCATAGAAATGATAGGTCGAGG
TAATGATAATGGTAATATTCGCAAGTTGCTAAGCGATATTGGCAATAAAGTACAATCAGGCTTGCCCTTATCCGAATGTT
TACGTGAGCATCCTAAATTTTTCGATGATTTATATTGCGATTTAGTTCAGTCGGGGGAACAATCCGGTGCTTTAGAAACC
ATCTTTGATCGAATTGCTATCTATAAAGAAAAAGCAGAAGCACTAAAATCAAAAATTAAAAAGGCGCTTAATTATCCAAT
TGCAGTTATTCTGATTGCGGCAATAGTAACATCTATATTACTGATTAAAGTTGTACCAACATTTGCTGAAATTTTTGAAG
GTTTTGGCGCAGAATTACCTGCGTTTACCCAATTTATCGTAGCGATTTCTGACAATATGGTAGCCTACTGGCATTTGGCA
TTAGGGGCCATTATTGCTGCAGGCTGGGCGTTTAAACGCGCCTATGCTAATAGTCAGGACTTACGAGATAAAGTTGACGC
TTTTCAACTGAAAATTCCCGTTATAGGAATGATTATGGATAAAGCCGCTGTTGCACGTTTTGCCCGTACGCTTTCAACGA
CTTTTGCCGCTGGTGTTCCATTGATTGATGCGTTAGATTCTGCCGCTGGTGCCTCAGGTAACGCGGTATACCGCGATGCC
ATTCAAGATATACGCAGCGAGGTCTCTGCCGGTATGCAAATGAACTTAGCCATGCGTAACGTTGATGTATTCCCTGATAT
GGTGGTGCAAATGGTAACGATTGGTGAAGAATCCGGTGCTCTAGATGATATGTTAGCGAAAGTTGCCAATATCTATGAGC
AGGAAGTGGATGACTTAGTTGATGGCTTAACCGCCCTTTTAGAACCGATGATCATGGCAGTGTTAGGTGTTGTGATCGGT
GGCTTGATTATCGGTATGTATTTACCAATATTTGCTATGGGCTCGATTATTTAA
ATGGCAGTTCAAGGCGCACAACAAAAAATGGTAAAACCTAAACCGTTGGAACAATTTCAGTGGGAAGGAGTGAACCGTAA
AGGTAAAAAAATTAAAGGTGAATTGTCCGCTACTAATATGAATGAGCTCAAAGCTCAACTTCGTAAACAAGGCATTACAC
CTCTAAAAACCAAGAAAAAACCTAAGCCTTTATTTGGTTTGGGCGGCAGCAAAGATAAAAAAATAACGCCGAAAGATATT
GCTACCATTACCCGTCAAATAGCGACTATGTTGGGTGCTGGTGTGCCGTTAGTGCAAACCATAGAAATGATAGGTCGAGG
TAATGATAATGGTAATATTCGCAAGTTGCTAAGCGATATTGGCAATAAAGTACAATCAGGCTTGCCCTTATCCGAATGTT
TACGTGAGCATCCTAAATTTTTCGATGATTTATATTGCGATTTAGTTCAGTCGGGGGAACAATCCGGTGCTTTAGAAACC
ATCTTTGATCGAATTGCTATCTATAAAGAAAAAGCAGAAGCACTAAAATCAAAAATTAAAAAGGCGCTTAATTATCCAAT
TGCAGTTATTCTGATTGCGGCAATAGTAACATCTATATTACTGATTAAAGTTGTACCAACATTTGCTGAAATTTTTGAAG
GTTTTGGCGCAGAATTACCTGCGTTTACCCAATTTATCGTAGCGATTTCTGACAATATGGTAGCCTACTGGCATTTGGCA
TTAGGGGCCATTATTGCTGCAGGCTGGGCGTTTAAACGCGCCTATGCTAATAGTCAGGACTTACGAGATAAAGTTGACGC
TTTTCAACTGAAAATTCCCGTTATAGGAATGATTATGGATAAAGCCGCTGTTGCACGTTTTGCCCGTACGCTTTCAACGA
CTTTTGCCGCTGGTGTTCCATTGATTGATGCGTTAGATTCTGCCGCTGGTGCCTCAGGTAACGCGGTATACCGCGATGCC
ATTCAAGATATACGCAGCGAGGTCTCTGCCGGTATGCAAATGAACTTAGCCATGCGTAACGTTGATGTATTCCCTGATAT
GGTGGTGCAAATGGTAACGATTGGTGAAGAATCCGGTGCTCTAGATGATATGTTAGCGAAAGTTGCCAATATCTATGAGC
AGGAAGTGGATGACTTAGTTGATGGCTTAACCGCCCTTTTAGAACCGATGATCATGGCAGTGTTAGGTGTTGTGATCGGT
GGCTTGATTATCGGTATGTATTTACCAATATTTGCTATGGGCTCGATTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
60.652 |
95.683 |
0.58 |
| pilC | Acinetobacter baumannii D1279779 |
52.998 |
100 |
0.53 |
| pilC | Acinetobacter baylyi ADP1 |
52.956 |
97.362 |
0.516 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.124 |
96.643 |
0.484 |
| pilC | Vibrio cholerae strain A1552 |
43.951 |
97.122 |
0.427 |
| pilG | Neisseria meningitidis 44/76-A |
42.963 |
97.122 |
0.417 |
| pilG | Neisseria gonorrhoeae MS11 |
42.716 |
97.122 |
0.415 |
| pilC | Vibrio campbellii strain DS40M4 |
41.346 |
99.76 |
0.412 |