Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   BKM66_RS06360 Genome accession   NZ_CP017666
Coordinates   1295650..1296489 (-) Length   279 a.a.
NCBI ID   WP_044676739.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1290650..1301489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS06345 (BKM66_06195) uidA 1291007..1292806 (-) 1800 WP_105183924.1 beta-glucuronidase -
  BKM66_RS06350 (BKM66_06200) - 1292826..1293854 (-) 1029 WP_105183925.1 sugar kinase -
  BKM66_RS06355 (BKM66_06205) - 1293910..1295463 (-) 1554 WP_105120462.1 MFS transporter -
  BKM66_RS06360 (BKM66_06210) endA 1295650..1296489 (-) 840 WP_044676739.1 DNA/RNA non-specific endonuclease Machinery gene
  BKM66_RS06365 (BKM66_06215) - 1296519..1296710 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  BKM66_RS06370 (BKM66_06220) murA 1296703..1297986 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BKM66_RS06375 (BKM66_06225) - 1298010..1298234 (-) 225 WP_024387485.1 DUF1146 family protein -
  BKM66_RS06380 (BKM66_06230) - 1298294..1298710 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  BKM66_RS06385 (BKM66_06235) atpD 1298720..1300126 (-) 1407 WP_105183926.1 F0F1 ATP synthase subunit beta -
  BKM66_RS06390 (BKM66_06240) - 1300146..1301024 (-) 879 WP_105183927.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30205.38 Da        Isoelectric Point: 6.2370

>NTDB_id=201304 BKM66_RS06360 WP_044676739.1 1295650..1296489(-) (endA) [Streptococcus suis strain 0061]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNIADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=201304 BKM66_RS06360 WP_044676739.1 1295650..1296489(-) (endA) [Streptococcus suis strain 0061]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACATTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595

Multiple sequence alignment