Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BKM66_RS06625 Genome accession   NZ_CP017666
Coordinates   1349286..1351088 (-) Length   600 a.a.
NCBI ID   WP_105183949.1    Uniprot ID   A0AAD0L1Q1
Organism   Streptococcus suis strain 0061     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344286..1356088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS06600 (BKM66_06450) - 1345577..1346062 (-) 486 WP_024395879.1 LURP-one-related family protein -
  BKM66_RS06605 (BKM66_06455) prsA 1346424..1347425 (-) 1002 WP_105183947.1 peptidylprolyl isomerase PrsA -
  BKM66_RS06610 (BKM66_06460) - 1347488..1348207 (-) 720 WP_105183953.1 O-methyltransferase -
  BKM66_RS06615 (BKM66_06465) - 1348282..1348830 (-) 549 WP_024384845.1 DUF6630 family protein -
  BKM66_RS06620 (BKM66_06470) - 1348841..1349284 (-) 444 WP_105183948.1 hypothetical protein -
  BKM66_RS06625 (BKM66_06475) pepF 1349286..1351088 (-) 1803 WP_105183949.1 oligoendopeptidase F Regulator
  BKM66_RS06630 (BKM66_06480) - 1351161..1351796 (-) 636 WP_105183950.1 hypothetical protein -
  BKM66_RS06635 (BKM66_06485) coiA 1351838..1352779 (-) 942 WP_105183951.1 competence protein CoiA family protein Machinery gene
  BKM66_RS06640 (BKM66_06490) - 1352841..1353407 (+) 567 WP_105183952.1 GNAT family protein -
  BKM66_RS06645 (BKM66_06495) - 1353542..1354798 (+) 1257 WP_105137943.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69176.40 Da        Isoelectric Point: 4.6008

>NTDB_id=201306 BKM66_RS06625 WP_105183949.1 1349286..1351088(-) (pepF) [Streptococcus suis strain 0061]
MSKQRHEIEEKYQWDLTTIFPTDEVWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=201306 BKM66_RS06625 WP_105183949.1 1349286..1351088(-) (pepF) [Streptococcus suis strain 0061]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACGATTTTCCCAACAGATGAAGTCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTCGCAGGTCATTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTTAAGGCAGAGGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACTTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGTAACTACATTCACTTTATGGAGTCTAAAAACCGTGACGTCCGCCAAGAAG
CCTATGAGGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTATGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
CGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCTTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCTGAGTTTGAACAAGCAATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAATGAGAAGTACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTATAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7

Multiple sequence alignment