Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   BKM66_RS05235 Genome accession   NZ_CP017666
Coordinates   1050947..1052173 (-) Length   408 a.a.
NCBI ID   WP_105183824.1    Uniprot ID   A0AAD0P8M7
Organism   Streptococcus suis strain 0061     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045947..1057173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS05205 (BKM66_05080) - 1046126..1047304 (-) 1179 WP_238145573.1 excalibur calcium-binding domain-containing protein -
  BKM66_RS05210 (BKM66_05085) - 1047568..1047750 (+) 183 WP_044670667.1 4-oxalocrotonate tautomerase -
  BKM66_RS05215 (BKM66_05090) lepA 1047800..1049632 (-) 1833 WP_024383525.1 translation elongation factor 4 -
  BKM66_RS05225 (BKM66_05095) ndk 1049870..1050283 (-) 414 WP_105183823.1 nucleoside-diphosphate kinase -
  BKM66_RS05230 (BKM66_05100) yihA 1050306..1050893 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BKM66_RS05235 (BKM66_05105) clpX 1050947..1052173 (-) 1227 WP_105183824.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  BKM66_RS05245 (BKM66_05115) - 1052371..1052883 (-) 513 WP_029171792.1 dihydrofolate reductase -
  BKM66_RS05250 (BKM66_05120) - 1053180..1054019 (-) 840 WP_105183825.1 thymidylate synthase -
  BKM66_RS05255 (BKM66_05125) - 1054071..1054373 (-) 303 WP_044679582.1 hypothetical protein -
  BKM66_RS05260 (BKM66_05130) - 1054385..1054663 (-) 279 WP_002934968.1 hypothetical protein -
  BKM66_RS05265 (BKM66_05135) - 1054789..1055748 (-) 960 WP_014637956.1 ROK family glucokinase -
  BKM66_RS05270 (BKM66_05140) - 1055840..1056175 (-) 336 WP_105183826.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45282.80 Da        Isoelectric Point: 4.5987

>NTDB_id=201303 BKM66_RS05235 WP_105183824.1 1050947..1052173(-) (clpX) [Streptococcus suis strain 0061]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDESDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=201303 BKM66_RS05235 WP_105183824.1 1050947..1052173(-) (clpX) [Streptococcus suis strain 0061]
ATGGCTGTCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAGCGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCAAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATATCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAACCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment