Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJI69_RS13030 Genome accession   NZ_CP017480
Coordinates   2866405..2867670 (-) Length   421 a.a.
NCBI ID   WP_046966390.1    Uniprot ID   A0A0G9HGC5
Organism   Luteibacter rhizovicinus DSM 16549 strain LJ96     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2861405..2872670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJI69_RS13010 (BJI69_12945) - 2862259..2863491 (+) 1233 WP_046966387.1 HD-GYP domain-containing protein -
  BJI69_RS13015 (BJI69_12950) - 2863488..2864741 (+) 1254 WP_052767041.1 GGDEF domain-containing phosphodiesterase -
  BJI69_RS13020 (BJI69_12955) coaE 2864852..2865457 (-) 606 WP_046966388.1 dephospho-CoA kinase -
  BJI69_RS13025 (BJI69_12960) - 2865454..2866323 (-) 870 WP_046966389.1 A24 family peptidase -
  BJI69_RS13030 (BJI69_12965) pilC 2866405..2867670 (-) 1266 WP_046966390.1 type II secretion system F family protein Machinery gene
  BJI69_RS13035 (BJI69_12970) pilB 2867815..2869542 (-) 1728 WP_046966391.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJI69_RS13040 (BJI69_12975) - 2869714..2870568 (+) 855 WP_046966392.1 glycosyltransferase family 2 protein -
  BJI69_RS13045 (BJI69_12980) - 2870574..2871551 (+) 978 WP_052767042.1 glycosyltransferase -
  BJI69_RS13050 (BJI69_12985) - 2871555..2872334 (+) 780 WP_046966393.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46104.43 Da        Isoelectric Point: 10.0206

>NTDB_id=198652 BJI69_RS13030 WP_046966390.1 2866405..2867670(-) (pilC) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
MATATATKNARAIGAARAEISKLVQYDWTALDKRGKRMKGEMQAKNAAMVKAELRRQGMNPQTVREKSKPIFGASGSRVK
PRDVAIFSRQIAAMMAAGVPMVQAFEIIANGQKNARFKNMLVEIRQAIEGGSSLHEALGLYPVEFDELYRNLVHAGESAG
VLDTVLDTVATYKERMESIKAKIKKALFYPIMILVVAFLVSMILLLFVVPVFQQTFAEAKVELPAPTQFIVSASKFVQAY
WWAMIGIIVGSVFALIFFKKRSLKFAHFLDRLSLKLPVIGDILNKSAIARFARTLGVTFHAGVPLVEALDAVSGATGSVV
YGDAVKQMRDDIAVGHQLQLAMRQTNLFPNMVVQMTAIGEEAGSLDHMLFKVAEFYEEEVETAVDTLASLLEPLIMVVLG
VLVGGMVISLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=198652 BJI69_RS13030 WP_046966390.1 2866405..2867670(-) (pilC) [Luteibacter rhizovicinus DSM 16549 strain LJ96]
ATGGCCACTGCCACCGCCACTAAAAACGCGCGCGCCATCGGTGCCGCGCGCGCTGAAATAAGCAAGCTCGTCCAGTACGA
CTGGACTGCCCTGGACAAGCGCGGCAAGCGCATGAAGGGCGAGATGCAGGCGAAGAACGCGGCCATGGTCAAGGCCGAGT
TGCGCCGGCAGGGCATGAATCCCCAGACGGTTCGCGAGAAGTCCAAGCCGATATTCGGCGCGTCCGGCAGCCGCGTCAAG
CCGCGTGACGTCGCCATTTTCAGCCGCCAGATCGCCGCCATGATGGCGGCGGGCGTCCCCATGGTGCAGGCCTTCGAGAT
CATTGCCAACGGCCAGAAAAACGCCCGTTTCAAGAACATGCTGGTGGAAATCCGCCAAGCCATCGAGGGTGGTTCCTCAC
TGCACGAAGCGCTTGGCCTCTACCCGGTCGAGTTCGACGAGCTCTATCGGAACCTGGTGCACGCTGGCGAATCGGCCGGT
GTGCTCGACACCGTGCTGGACACGGTGGCGACCTACAAGGAGCGCATGGAGAGCATCAAGGCCAAGATCAAGAAAGCCTT
GTTCTACCCGATCATGATCCTGGTCGTCGCCTTCCTGGTGTCGATGATCCTGCTGCTGTTCGTCGTTCCCGTGTTCCAGC
AGACCTTCGCCGAAGCCAAGGTGGAACTGCCGGCGCCGACCCAGTTCATCGTCAGTGCCTCGAAGTTCGTGCAGGCCTAC
TGGTGGGCGATGATCGGCATCATCGTCGGTTCGGTTTTCGCGCTCATCTTCTTCAAGAAGCGATCGCTCAAGTTCGCCCA
CTTCCTTGATCGACTCTCGCTGAAGCTCCCAGTCATCGGCGACATTCTCAACAAGTCGGCTATCGCCCGCTTCGCTCGTA
CGCTGGGCGTTACCTTCCACGCTGGTGTGCCTCTGGTGGAAGCTCTCGATGCCGTATCCGGTGCAACGGGCAGCGTCGTC
TACGGAGACGCGGTAAAGCAGATGCGCGACGACATCGCCGTCGGCCACCAGCTCCAGCTGGCCATGCGCCAGACCAATCT
CTTCCCCAACATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCTCGCTCGACCACATGCTGTTCAAGGTGGCCG
AGTTCTACGAGGAAGAAGTCGAGACCGCGGTGGACACCCTCGCCAGCCTGCTCGAGCCGCTCATCATGGTCGTCCTCGGC
GTCCTCGTCGGCGGCATGGTCATCTCCCTCTACCTGCCGATCTTCAAGCTGGCCGGCACGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G9HGC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.629

94.774

0.489
  pilC Pseudomonas stutzeri DSM 10701

51.515

94.062

0.485
  pilC Acinetobacter baumannii D1279779

50.63

94.299

0.477
  pilC Acinetobacter baylyi ADP1

48.363

94.299

0.456
  pilG Neisseria meningitidis 44/76-A

40.979

92.162

0.378
  pilG Neisseria gonorrhoeae MS11

40.979

92.162

0.378
  pilC Vibrio cholerae strain A1552

39.494

93.824

0.371
  pilC Vibrio campbellii strain DS40M4

38.791

94.299

0.366

Multiple sequence alignment