Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPB072_RS04980 Genome accession   NZ_CP017476
Coordinates   1031475..1032692 (-) Length   405 a.a.
NCBI ID   WP_066092418.1    Uniprot ID   A0A162P4G9
Organism   Hydrogenophaga crassostreae strain LPB0072     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026475..1037692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB072_RS04955 (LPB072_04955) - 1027641..1028528 (+) 888 WP_231943429.1 ATP-binding protein -
  LPB072_RS04960 (LPB072_04960) - 1028539..1028988 (+) 450 WP_231943430.1 NUDIX domain-containing protein -
  LPB072_RS22980 - 1029005..1029211 (-) 207 WP_082877004.1 DNA gyrase inhibitor YacG -
  LPB072_RS04965 (LPB072_04965) zapD 1029211..1029966 (-) 756 WP_066092409.1 cell division protein ZapD -
  LPB072_RS04970 (LPB072_04970) coaE 1030010..1030624 (-) 615 WP_066092412.1 dephospho-CoA kinase -
  LPB072_RS04975 (LPB072_04975) - 1030621..1031475 (-) 855 WP_066092415.1 A24 family peptidase -
  LPB072_RS04980 (LPB072_04980) pilC 1031475..1032692 (-) 1218 WP_066092418.1 type II secretion system F family protein Machinery gene
  LPB072_RS04985 (LPB072_04985) pilB 1032723..1034462 (-) 1740 WP_066092421.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPB072_RS04990 (LPB072_04990) - 1034757..1035686 (-) 930 WP_066092424.1 polyprenyl synthetase family protein -
  LPB072_RS04995 (LPB072_04995) rplU 1035962..1036273 (+) 312 WP_066092426.1 50S ribosomal protein L21 -
  LPB072_RS05000 (LPB072_05000) rpmA 1036289..1036546 (+) 258 WP_066092429.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44606.35 Da        Isoelectric Point: 9.1483

>NTDB_id=198605 LPB072_RS04980 WP_066092418.1 1031475..1032692(-) (pilC) [Hydrogenophaga crassostreae strain LPB0072]
MATAASKSIKDFVFEWEGKDRNGKQVRGELRAGGENQVTAALRRQGIVTTKVKKRRTTRGARIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPNVTKLLNDIRSDVETGTSLSASFRKHPLYFNSLYCNLVEAGEAAGILEELLDRLAEYMEKT
EGIKSKIKSALMYPISVIVVAFVVVAVIMIWVIPSFKQVFASFGAELPAPTLMVMAMSDFFVEYWWLIFGLIFGGGYFFL
QAWRRSEKVQFFMDRVMLKLPIFGTLVEKSVVARWTRTLSTMFAAGVPLVEALDSVGGAAGNMIYARATEKIQQEVSTGT
SLTNAMTNVQLFPSMVLQMCAIGEESGSIDHMLSKAADFYEAEVDDMVAGLSSLMEPIIIVLLGTIIGGIVVSMYLPIFQ
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=198605 LPB072_RS04980 WP_066092418.1 1031475..1032692(-) (pilC) [Hydrogenophaga crassostreae strain LPB0072]
ATGGCAACCGCAGCATCCAAGAGCATCAAAGACTTCGTTTTCGAATGGGAAGGGAAGGATCGCAACGGAAAACAGGTTCG
CGGTGAATTGCGTGCAGGTGGTGAAAACCAGGTCACCGCCGCACTGCGGCGCCAGGGGATCGTGACCACAAAGGTCAAAA
AGCGCAGGACCACCCGAGGCGCTCGCATCAAACCCAAAGACATTGCCATTTTTACGCGCCAGCTCGCGACCATGATGAAG
GCAGGTGTCCCGCTTTTGCAGGCATTCGACATTGTCGGCAGGGGCAATCCCAACCCCAACGTCACCAAACTGCTCAATGA
CATCCGGTCGGATGTAGAAACCGGTACGTCGCTCAGCGCATCTTTTCGCAAGCATCCTCTGTATTTCAACAGCCTCTATT
GCAACCTGGTCGAGGCCGGTGAAGCGGCCGGTATTCTGGAAGAGCTGCTTGACCGTTTGGCCGAATACATGGAGAAGACG
GAAGGCATCAAGTCAAAAATCAAATCGGCCTTGATGTACCCCATCTCTGTGATCGTGGTAGCTTTTGTCGTTGTTGCCGT
GATCATGATTTGGGTGATCCCGTCGTTCAAGCAGGTATTTGCCTCCTTTGGCGCCGAGTTGCCCGCGCCAACGCTCATGG
TCATGGCCATGAGCGATTTCTTTGTTGAGTACTGGTGGTTGATCTTCGGGTTGATCTTTGGAGGAGGTTATTTTTTCCTG
CAAGCATGGCGGCGCAGTGAGAAAGTACAGTTTTTCATGGATCGCGTGATGCTGAAACTGCCCATTTTCGGCACGCTTGT
CGAGAAGTCCGTTGTTGCTCGCTGGACGCGCACCCTTTCAACGATGTTTGCCGCAGGCGTTCCGCTGGTCGAAGCACTGG
ACTCAGTCGGGGGAGCCGCTGGCAACATGATCTACGCCAGAGCCACCGAGAAAATTCAGCAAGAGGTATCGACAGGCACC
AGCCTGACCAACGCGATGACCAACGTCCAGCTTTTCCCCTCCATGGTCCTGCAGATGTGTGCGATTGGAGAGGAATCCGG
CTCAATTGACCATATGCTGAGCAAGGCAGCCGACTTCTATGAAGCGGAAGTAGACGACATGGTCGCTGGCCTGTCCAGCC
TGATGGAACCCATCATCATCGTACTGCTCGGAACCATCATTGGCGGCATCGTTGTTTCGATGTATCTGCCTATTTTCCAA
CTCGGCCAAGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A162P4G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

52.5

98.765

0.519
  pilG Neisseria meningitidis 44/76-A

52.25

98.765

0.516
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilC Acinetobacter baylyi ADP1

48.649

100

0.489
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio cholerae strain A1552

41.103

98.519

0.405
  pilC Thermus thermophilus HB27

38.221

100

0.393
  pilC Vibrio campbellii strain DS40M4

39.25

98.765

0.388

Multiple sequence alignment