Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BFX80_RS13765 Genome accession   NZ_CP017114
Coordinates   3268452..3269690 (+) Length   412 a.a.
NCBI ID   WP_084209204.1    Uniprot ID   -
Organism   Cobetia marina strain JCM 21022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3263452..3274690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFX80_RS13745 (BFX80_13410) - 3263512..3264792 (+) 1281 WP_084209201.1 cation diffusion facilitator family transporter -
  BFX80_RS13750 (BFX80_13415) - 3264917..3265219 (+) 303 WP_077371726.1 hypothetical protein -
  BFX80_RS13755 pilA 3265266..3265706 (-) 441 WP_084209202.1 pilin Machinery gene
  BFX80_RS13760 (BFX80_13420) pilB 3266470..3268206 (+) 1737 WP_084209203.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BFX80_RS13765 (BFX80_13425) pilC 3268452..3269690 (+) 1239 WP_084209204.1 type II secretion system F family protein Machinery gene
  BFX80_RS13770 (BFX80_13430) pilD 3269789..3270649 (+) 861 WP_084209205.1 A24 family peptidase Machinery gene
  BFX80_RS13775 (BFX80_13435) coaE 3270649..3271296 (+) 648 WP_084209206.1 dephospho-CoA kinase -
  BFX80_RS13780 (BFX80_13440) yacG 3271289..3271534 (+) 246 WP_084209207.1 DNA gyrase inhibitor YacG -
  BFX80_RS13785 (BFX80_13445) - 3271663..3272616 (-) 954 WP_077371708.1 Nudix family hydrolase -
  BFX80_RS13790 (BFX80_13450) argJ 3272725..3273948 (-) 1224 WP_084209208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44753.26 Da        Isoelectric Point: 9.8520

>NTDB_id=195763 BFX80_RS13765 WP_084209204.1 3268452..3269690(+) (pilC) [Cobetia marina strain JCM 21022]
MATIRTAKKDKKKAGIETWQWTGKNSRGENVKGELMSANVDQVKNTLAGQGIVVKRLRKKSALFGGSKRVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDLMNQVGAGASFSEALRKHPQHFDNLFTNLVAAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPAAVICVGFGVTAILLIKVVPQFETLFNGFGAELPAFTQLTITMSEYAQAYWYIGLGAVV
LAAFLIAQGMKRSDKFAYAMHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLIESLDTAAGATGSKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGALDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFEMGNVI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=195763 BFX80_RS13765 WP_084209204.1 3268452..3269690(+) (pilC) [Cobetia marina strain JCM 21022]
ATGGCGACGATCAGAACTGCCAAGAAAGACAAGAAGAAGGCGGGCATAGAAACCTGGCAATGGACAGGCAAGAATTCGCG
CGGTGAAAATGTCAAGGGCGAATTGATGTCCGCCAATGTCGATCAGGTGAAGAATACGCTGGCTGGCCAAGGTATCGTCG
TCAAGCGTTTACGTAAGAAATCCGCCCTGTTCGGTGGCAGCAAGAGAGTCAGCGGCAAGGACGTCACCATGTTTGCTCGA
CAGATGGCGACGATGATTCGCGCCGGCGTCCCCGTTCTGCAAGCCTTCGGTATTGTCGCCGAGAGCATGAAAAGCCCGGG
CATGCGCCACCTGGTGGAAGATCTGATGAACCAGGTCGGCGCGGGCGCCAGCTTCTCGGAAGCGCTGCGCAAGCACCCAC
AACATTTCGATAATCTATTTACCAACCTGGTTGCCGCTGGCGAACAGGCCGGTGCCCTCGACAAGATGCTGGACCGCGTC
GCGACTTACAAAGAGAAGATCGATTCCTTGAAAGCGCGTGTAAAAAAGGCGCTGTATTACCCTGCGGCCGTCATATGCGT
AGGGTTTGGGGTCACCGCCATACTATTGATCAAGGTTGTCCCTCAATTCGAAACCTTATTCAATGGATTTGGAGCTGAGT
TACCCGCTTTCACTCAACTGACCATCACCATGTCCGAGTACGCGCAGGCTTATTGGTATATTGGTCTTGGCGCGGTAGTA
CTAGCTGCTTTTCTTATCGCCCAGGGTATGAAGCGATCGGACAAGTTCGCCTATGCCATGCACCGCTTCATGCTGAAAGT
ACCAGTGCTGGGTGACATACTTGACAAGTCTTCGGTAGCACGATATTCACGCACCCTCGCCACCACCTTTCAGGCTGGCG
TACCCTTGATAGAATCTCTAGATACTGCTGCCGGCGCGACGGGCAGCAAGGTCTATGAGCGCGCTATCGCCCAGATCAAG
GAAGATGTCTCCACAGGCCAGCAGCTCAACTTCGCCATGCGTAACACCCAGCTATTTCCCACACTGGCAGTTCAGATGGT
GGCTATAGGGGAAGAGTCAGGTGCCTTGGATGCCATGCTCAACAAGGTCGCCGACTTCTATGAAGAAGATGTCGACAACA
AGGTCGATGCCCTGACCTCGCTACTGGAACCCTTGATCATCGTGGTATTGGGTACCTTGGTCGGTGGCTTGGTAGTTTCC
ATGTACCTACCAATATTCGAAATGGGTAATGTAATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.468

95.874

0.551
  pilC Acinetobacter baylyi ADP1

54.054

98.786

0.534
  pilC Acinetobacter baumannii D1279779

53.071

98.786

0.524
  pilC Legionella pneumophila strain ERS1305867

51.597

98.786

0.51
  pilC Vibrio campbellii strain DS40M4

45.025

97.573

0.439
  pilC Vibrio cholerae strain A1552

44.11

96.845

0.427
  pilG Neisseria meningitidis 44/76-A

40.976

99.515

0.408
  pilG Neisseria gonorrhoeae MS11

40.976

99.515

0.408

Multiple sequence alignment