Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BGL52_RS04660 Genome accession   NZ_CP017065
Coordinates   897670..898911 (+) Length   413 a.a.
NCBI ID   WP_087911831.1    Uniprot ID   A0AAN1EYA6
Organism   Lacticaseibacillus casei strain LC5     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892670..903911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL52_RS04640 (BGL52_04360) - 893763..895058 (+) 1296 WP_087911828.1 pitrilysin family protein -
  BGL52_RS04645 (BGL52_04365) - 895055..895783 (+) 729 WP_087911829.1 SDR family oxidoreductase -
  BGL52_RS04650 (BGL52_04370) - 895870..896808 (+) 939 WP_087911830.1 helix-turn-helix domain-containing protein -
  BGL52_RS04655 (BGL52_04375) pgsA 896805..897398 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BGL52_RS04660 (BGL52_04380) cinA 897670..898911 (+) 1242 WP_087911831.1 competence/damage-inducible protein A Machinery gene
  BGL52_RS04665 (BGL52_04385) recA 898966..899952 (+) 987 Protein_834 recombinase RecA -
  BGL52_RS04675 (BGL52_04390) rny 900610..902181 (+) 1572 WP_010489446.1 ribonuclease Y -
  BGL52_RS04680 (BGL52_04395) - 902327..902980 (-) 654 WP_049169075.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44162.56 Da        Isoelectric Point: 6.3712

>NTDB_id=195014 BGL52_RS04660 WP_087911831.1 897670..898911(+) (cinA) [Lacticaseibacillus casei strain LC5]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNKLQAMYPQGADILVNRVGLAVGAWVEQHQHAYVLLPGPPKEFIPMV
DHELLPHLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQADAEAKLEPVI
GAIMDREGRYFYGYGDDNSLAKELVKALAATDKQITAAESLTAGAFQAALGDVPGVSDYFKGGFVTYALATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQAPVAQIYHFPGGRNDVRKRAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=195014 BGL52_RS04660 WP_087911831.1 897670..898911(+) (cinA) [Lacticaseibacillus casei strain LC5]
ATGCAAGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGCGCAACGCCTGGCTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGATATCGTGATTTTGATCGGTGGTTTAGGACCCACACCAGATGATCTGACGAAACAAACG
TTGGCTGCTCATCTGAATTTACCGTTGGTTGAAGATGCGGACGCCATGGCAAAACTGGCGGCTCGGGTTAAACAACAGCA
GCGGCCGATGACGCCAAATAATAAGTTACAGGCGATGTATCCGCAAGGTGCTGATATATTGGTTAATCGCGTCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGGCCGCCTAAGGAATTTATTCCAATGGTT
GATCATGAGCTATTGCCTCATTTGGCCAAGTATAGCGGCCATCATGAAGCTTTTGTCAGCCGCGTCATGCGCTTCTTTGG
TGTTGGTGAATCACAATTGGTGACAGATTTAGGTGACTTGATTGCCAAGCAAACGAATCCGACATTAGCCACTTACATCA
AGGATCATGAGGTGACTATTCGGGTGACGGCCAGCGGTGAGACCCAAGCAGACGCTGAAGCAAAATTGGAACCGGTGATT
GGCGCTATTATGGATCGCGAGGGACGTTACTTTTATGGTTATGGTGATGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGCGGCGACCGATAAGCAAATAACAGCAGCGGAGAGTTTGACAGCCGGTGCGTTCCAGGCGGCTTTGGGGGATGTTC
CCGGCGTCTCGGATTATTTCAAAGGTGGTTTTGTGACGTACGCATTAGCCACTAAAGCAGCATTTTTGAATATTGATGCG
CGTGAGTTAGCGGCTCATGGGGTGGTGAGTGAATTTACCGCCAAAGCGATGGCCGAGCACGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCCGGGCCCGACACACTGGAAGGGCAGCCAGCCGGGACAGTTTGGATCGGCT
TGGCGCGGATGGGCCAAGCGCCGGTTGCACAGATCTATCATTTTCCCGGTGGCCGCAATGATGTTCGCAAACGCGCGGTT
ATGACCGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.594

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.594

100

0.516
  cinA Streptococcus mutans UA159

50.725

100

0.508
  cinA Streptococcus pneumoniae TIGR4

49.881

100

0.508
  cinA Streptococcus pneumoniae Rx1

49.406

100

0.504
  cinA Streptococcus pneumoniae R6

49.406

100

0.504
  cinA Streptococcus pneumoniae D39

49.169

100

0.501
  cinA Bacillus subtilis subsp. subtilis str. 168

44.878

99.274

0.446
  cinA Streptococcus suis isolate S10

42.147

92.494

0.39

Multiple sequence alignment