Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BFM96_RS04845 Genome accession   NZ_CP016953
Coordinates   1019500..1021476 (+) Length   658 a.a.
NCBI ID   WP_068991046.1    Uniprot ID   A0A917A6G4
Organism   Streptococcus himalayensis strain HTS2     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014500..1026476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04835 amiA3 1015100..1017085 (+) 1986 WP_068991044.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04840 amiA3 1017241..1019220 (+) 1980 WP_068991045.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04845 amiA3 1019500..1021476 (+) 1977 WP_068991046.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04850 amiC 1021537..1023033 (+) 1497 WP_068991047.1 ABC transporter permease Regulator
  BFM96_RS04855 amiD 1023033..1023959 (+) 927 WP_068991054.1 oligopeptide ABC transporter permease OppC Regulator
  BFM96_RS04860 amiE 1023968..1025035 (+) 1068 WP_068991057.1 ABC transporter ATP-binding protein Regulator
  BFM96_RS04865 amiF 1025046..1025969 (+) 924 WP_068991060.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72421.37 Da        Isoelectric Point: 4.6178

>NTDB_id=194024 BFM96_RS04845 WP_068991046.1 1019500..1021476(+) (amiA3) [Streptococcus himalayensis strain HTS2]
MNKSKLFALAGVSLLSIGVLAACSSSSKSSGGDGNTYSYVYATDPESLDYLLTSKASTLDLVTNGVDGLLANDNYGNLVP
SLAEDWKVSKDGLTYTYKLRKGAKWYTTEGEEYAEVTAKDFVAGLKHAADKKSESLYLIQDSIKGLAAYVNGESKDFASV
GVKALDDYTVQYTLNSPEPYWNSKTTNGILYPVNEEFLTSKGDKFAQPTDPSSLLYNGPFLLKSLVSKSSVEFVKNENYW
DKDNVHVDAVKLSYYDGQDVDSLARNFTDGAYSVARLFPSSPNYSKVAEDFKENIYTTQPGVGSSAIGVNIDRQSYEHTS
KTTDEEKTSTKKALLNKDFRQAINFAFDRNAFSSQVNGEEIAEKAVRNLFVPSDFVSIGEKTFGDVVQEKIASYGDEWKD
VKLADSINGIYNPEKAKAEFEKAKKALEADGVKFPIHIDVPVVETSKNFVARMQSFKQSVESTLGNENVVIDLQLMSEDE
ANNITYYAATAKAEDWDMSGAVGWNPDFSDPSTYLDILKSTNAEQTKTFFGFEGADNASAKAVGFDDYNKLAEEANKEVT
DVSVRYEKYAAAQAWLTDSSLLLPTNASTGAAPFISRIVPFTLPSAASGNKDSVYYKYVKLGKNVVTKKEYDEAREKWLK
EKAESNAKAQKDLESHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=194024 BFM96_RS04845 WP_068991046.1 1019500..1021476(+) (amiA3) [Streptococcus himalayensis strain HTS2]
ATGAACAAAAGCAAATTATTCGCTTTAGCAGGTGTAAGCTTGCTGAGCATCGGTGTATTGGCAGCCTGCTCAAGTAGCTC
TAAGTCGTCAGGTGGTGATGGAAATACTTATAGCTATGTCTATGCAACCGACCCTGAATCATTAGATTACTTACTAACTT
CGAAGGCTTCAACGCTTGATTTGGTGACAAATGGGGTTGACGGACTTCTAGCAAATGATAACTATGGGAACCTAGTTCCG
TCTCTTGCAGAGGATTGGAAAGTTTCTAAGGACGGCTTGACCTATACGTATAAACTTCGTAAAGGTGCTAAATGGTACAC
GACTGAAGGCGAAGAGTATGCTGAAGTAACTGCGAAAGACTTCGTTGCAGGATTAAAGCATGCTGCAGATAAAAAATCAG
AATCTCTTTACTTGATTCAAGATTCGATCAAGGGCTTGGCAGCGTATGTAAATGGTGAAAGCAAGGATTTTGCTAGTGTC
GGAGTGAAGGCTCTTGATGATTATACGGTTCAATATACCTTAAATTCTCCAGAACCATATTGGAATTCTAAAACGACAAA
CGGAATTCTCTACCCTGTCAATGAAGAATTCTTGACATCTAAGGGAGATAAGTTTGCCCAACCGACAGACCCATCTTCTC
TTCTATACAATGGACCATTCCTTTTGAAATCATTGGTTTCTAAATCATCTGTTGAGTTTGTCAAAAATGAAAACTATTGG
GACAAAGACAATGTTCATGTTGATGCAGTGAAACTATCTTACTATGATGGTCAAGATGTGGACTCTCTTGCACGTAACTT
TACAGATGGAGCCTACTCTGTTGCTCGTCTGTTCCCTTCAAGTCCAAACTATTCTAAGGTAGCTGAAGATTTCAAAGAAA
ATATCTACACGACTCAACCAGGAGTAGGCAGTAGCGCGATCGGAGTCAACATTGACCGTCAAAGCTATGAACACACCTCT
AAGACGACAGATGAAGAAAAAACATCTACTAAGAAGGCTTTGTTGAATAAAGACTTCCGTCAAGCAATCAACTTTGCCTT
TGACCGCAATGCCTTCTCTTCACAGGTTAATGGAGAGGAAATTGCTGAAAAAGCAGTTCGTAACCTCTTTGTACCGTCTG
ACTTCGTTTCAATTGGCGAAAAGACGTTTGGAGATGTCGTTCAAGAAAAGATTGCTTCTTATGGCGATGAGTGGAAGGAT
GTCAAGCTAGCAGATTCGATAAATGGAATTTACAACCCAGAGAAAGCCAAAGCTGAGTTTGAAAAAGCGAAAAAAGCATT
GGAAGCTGATGGTGTGAAATTCCCAATTCATATCGACGTTCCCGTTGTGGAAACATCTAAAAACTTTGTTGCTCGGATGC
AATCCTTCAAGCAATCGGTAGAAAGCACACTAGGTAATGAAAATGTCGTCATTGATCTTCAGTTGATGTCTGAGGATGAA
GCGAACAATATCACGTATTATGCAGCGACAGCCAAAGCTGAGGATTGGGATATGTCAGGGGCCGTTGGTTGGAACCCAGA
CTTTAGTGATCCATCGACTTACCTAGATATTTTGAAATCGACAAATGCTGAACAAACCAAGACCTTCTTTGGTTTTGAAG
GAGCAGATAATGCTTCTGCGAAAGCCGTTGGCTTTGATGACTATAACAAATTGGCAGAAGAAGCTAATAAAGAGGTGACG
GACGTTTCTGTTCGTTATGAAAAATACGCAGCAGCACAAGCTTGGTTAACCGATAGTTCTCTATTGTTACCAACGAATGC
AAGTACTGGTGCAGCACCATTTATTTCACGTATCGTACCATTTACACTCCCATCTGCAGCAAGTGGAAATAAGGACAGTG
TTTATTACAAATATGTGAAACTTGGTAAGAATGTTGTAACCAAGAAAGAATATGATGAAGCACGCGAAAAATGGCTCAAA
GAAAAAGCAGAGTCAAACGCTAAAGCTCAAAAAGACCTTGAAAGTCACGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.091

100

0.643
  amiA3 Streptococcus thermophilus LMG 18311

63.788

100

0.64
  amiA Streptococcus salivarius strain HSISS4

63.733

100

0.638

Multiple sequence alignment