Detailed information NTG0194028

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: BFM96_RS04865
• Genome accession: NZ_CP016953
• Coordinates: 1025046..1025969 (+)
• Length: 307 a.a.
• NCBI ID: WP_068991060.1
• Uniprot ID: A0A917EEP8
• Organism: Streptococcus himalayensis strain HTS2
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1026641..1027150	1025046..1025969	flank	672

Gene organization within MGE regions

Location: 1025046..1027150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFM96_RS04865	amiF	1025046..1025969 (+)	924	WP_068991060.1	ATP-binding cassette domain-containing protein	Regulator
BFM96_RS10825	-	1026103..1027150 (+)	1048	WP_145939709.1	IS630 family transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34780.85 Da
• Isoelectric Point: 6.1852

>NTDB_id=194028 BFM96_RS04865 WP_068991060.1 1025046..1025969(+) (amiF) [Streptococcus himalayensis strain HTS2]
MTEKLVEVKDLEISFGEGSKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSAGDIFYEGKRINGKKSRE
EAAEVIRKIQMIFQDPAASLNERATIDYIISEGLHNFNLFKDEEERQAKVKEIITEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMRPDFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPDQHDYTTDKPEMVEIRPGHFVWGNQAEIAKYRKEF

Nucleotide

• Length: 924 bp

>NTDB_id=194028 BFM96_RS04865 WP_068991060.1 1025046..1025969(+) (amiF) [Streptococcus himalayensis strain HTS2]
ATGACTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGCAAGAAGTTTGTAGCTGTTAAAAA
TGCAAATTTCTTCATCAATAGGGGAGAAACCTTCTCGCTTGTAGGAGAATCAGGTTCAGGTAAAACGACTATTGGTCGGG
CCATTATTGGCTTAAATGAGACGAGTGCCGGAGATATCTTTTACGAAGGGAAGCGGATCAATGGCAAGAAGTCAAGAGAG
GAAGCAGCAGAAGTTATTCGGAAGATTCAGATGATTTTCCAAGACCCTGCAGCAAGCCTGAATGAGCGTGCTACCATTGA
CTATATTATCTCTGAAGGTTTGCATAATTTTAATCTTTTTAAAGATGAGGAAGAGCGTCAGGCAAAAGTAAAGGAAATTA
TCACAGAAGTTGGTTTGTTGGCAGAGCATTTAACTCGTTATCCACATGAATTTTCAGGTGGTCAACGCCAGCGGATTGGG
ATTGCTCGTGCCTTGGTGATGCGCCCAGACTTTGTAATCGCAGATGAGCCTATCTCAGCCTTGGACGTGTCTGTCCGTGC
TCAAGTTTTGAATCTTTTGAAGAAGTTTCAAAGAGAATTGGGCTTGACTTATCTCTTCATCGCTCATGATTTGTCTGTCG
TTCGTTTCATTTCAGATCGAATTGCAGTTATCTATAAAGGAGTGATTGTAGAAGTGGCAGAGACAGAGGAACTCTTCAAT
AATCCAATTCACCCTTATACTCAGTCGCTTTTATCGGCTGTACCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTGCT
GAAAGTCTATGACCCAGACCAGCATGATTACACAACGGACAAACCAGAAATGGTTGAAATTCGTCCGGGACACTTTGTTT
GGGGAAACCAAGCAGAGATTGCCAAATATAGAAAAGAATTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus salivarius strain HSISS4	85.621	99.674	0.853
amiF	Streptococcus thermophilus LMG 18311	85.294	99.674	0.85
amiF	Streptococcus thermophilus LMD-9	84.967	99.674	0.847