Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BFM96_RS04840 Genome accession   NZ_CP016953
Coordinates   1017241..1019220 (+) Length   659 a.a.
NCBI ID   WP_068991045.1    Uniprot ID   -
Organism   Streptococcus himalayensis strain HTS2     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012241..1024220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04830 amiA 1012979..1014943 (+) 1965 WP_068991042.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04835 amiA3 1015100..1017085 (+) 1986 WP_068991044.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04840 amiA3 1017241..1019220 (+) 1980 WP_068991045.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04845 amiA3 1019500..1021476 (+) 1977 WP_068991046.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04850 amiC 1021537..1023033 (+) 1497 WP_068991047.1 ABC transporter permease Regulator
  BFM96_RS04855 amiD 1023033..1023959 (+) 927 WP_068991054.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72704.70 Da        Isoelectric Point: 4.6373

>NTDB_id=194023 BFM96_RS04840 WP_068991045.1 1017241..1019220(+) (amiA3) [Streptococcus himalayensis strain HTS2]
MKKSKVLALAGVALLSAGLLAACSGGSDSSKEGSTYSYVYATDPETLDYLASGKASTHDLVASAIDGLLENDKYGNLIPS
LAEDWTVSKDGLTYTYTLRKGVNWYTSDGEEYAEVKAQDFVAGLKHAADGKSEALILVQNSVKGLDDYVTGKTKDFSEVG
VKALDDYTVQYTLNNPEPYWNAKTTSATLFPVNEEFLKAKGDKFGQATDPSSILYNGPYIIKSLVSKSTIEYAKNENYWD
KDNVHFDNVKMTYFDGQDVDTLGRGFSDGNFIVARLFPNSSNYSTVAEKFKENIYYTQPQATTFGIGINIDRQNYNHSSK
TTDEQKSSTKKAILNKDFRQALSFALDRKAFVAQVNGEEAAELSVRNLFVPSNFVQVGDKSFGDLVEEKIASYGDEWKDV
KLADSKDSIYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVAETDKTGILQIQSLKQSIEKNLGSENVVIDIQQMSQDEL
LNITYYAATAAAQDWDISTSVGWTPDYPDPSTYLDILKTTEQEYSKTYLGYEGADNAAAKQVGLQEYDKLANEAGAEVLD
TMSRYEKYAAAQAWLTDSSLIIPIQGAPGGAPQLSRLKPFSGAYAETGSKAHSTDYYKYRQPNGGVVTKKEYDEAREKWL
KEKAESNAKYQEDLAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=194023 BFM96_RS04840 WP_068991045.1 1017241..1019220(+) (amiA3) [Streptococcus himalayensis strain HTS2]
ATGAAAAAATCGAAAGTTTTAGCATTGGCAGGAGTTGCTCTGCTTAGTGCTGGCTTACTAGCAGCTTGTTCGGGTGGGTC
AGACTCGTCAAAAGAAGGAAGTACCTATTCTTATGTATATGCAACGGATCCTGAAACACTGGATTATCTTGCTTCAGGAA
AGGCAAGTACCCATGACTTGGTGGCTAGTGCGATTGATGGTTTATTAGAAAACGACAAATATGGAAATCTAATCCCTTCT
TTGGCGGAAGATTGGACGGTCTCAAAAGATGGATTGACCTACACGTATACCCTGCGCAAGGGAGTTAACTGGTATACTTC
AGATGGTGAAGAATATGCAGAAGTGAAGGCTCAAGACTTTGTGGCAGGTTTGAAACATGCTGCAGATGGGAAATCAGAAG
CCCTTATCCTAGTCCAAAATTCCGTTAAGGGACTTGATGACTATGTAACAGGTAAGACAAAAGATTTCTCAGAAGTGGGC
GTCAAGGCTTTAGATGACTATACTGTTCAATATACCTTGAATAATCCAGAACCATACTGGAATGCCAAAACAACATCTGC
GACTTTGTTTCCAGTGAATGAAGAGTTCCTGAAAGCCAAGGGAGATAAGTTCGGTCAAGCGACAGATCCTAGCTCCATCC
TTTACAATGGCCCATATATCATCAAGTCCTTGGTTTCAAAATCAACGATTGAATATGCGAAGAACGAAAATTATTGGGAT
AAGGACAATGTGCATTTTGATAATGTTAAGATGACTTACTTTGATGGTCAAGATGTAGATACCTTGGGTCGTGGCTTCTC
TGATGGAAACTTTATTGTTGCCCGCCTATTCCCAAATAGTTCAAACTACTCAACGGTTGCTGAGAAATTCAAAGAAAATA
TCTACTATACACAACCACAAGCAACTACCTTTGGAATAGGGATTAACATTGACCGTCAAAATTACAACCATTCATCTAAG
ACAACAGATGAGCAAAAATCATCCACGAAAAAAGCTATTTTAAATAAAGACTTCCGTCAAGCTTTGAGCTTTGCCTTGGA
TAGAAAAGCTTTTGTGGCACAGGTAAATGGGGAAGAGGCTGCAGAACTTTCTGTACGAAATCTTTTCGTCCCATCGAACT
TTGTCCAAGTTGGAGATAAGAGTTTTGGGGACCTTGTTGAGGAGAAAATTGCGAGCTATGGAGATGAGTGGAAGGATGTC
AAGTTAGCAGACTCCAAAGATAGCATCTACAATCCTGAGAAAGCCAAAGCAGAATTTGCTAAAGCTAAAGAAGCCTTGCA
AGCAGAAGGGGTACAATTCCCAATCCATTTGGATGTTCCTGTTGCAGAAACAGACAAGACAGGAATCCTTCAAATTCAAT
CCTTGAAACAATCTATTGAAAAGAATTTGGGATCAGAAAATGTCGTGATTGATATCCAACAAATGTCTCAAGATGAGTTA
CTTAATATCACTTATTATGCAGCTACTGCAGCAGCGCAAGACTGGGATATTTCAACATCGGTTGGTTGGACTCCAGACTA
TCCGGACCCATCTACCTACCTAGATATTTTGAAAACAACAGAGCAAGAATATTCCAAGACTTATTTAGGTTATGAAGGGG
CAGATAATGCAGCAGCTAAGCAAGTGGGCCTCCAAGAATATGATAAATTGGCCAATGAAGCTGGGGCAGAGGTTCTTGAT
ACTATGAGTCGTTATGAAAAATATGCAGCAGCCCAAGCTTGGTTGACAGATAGTTCATTGATTATCCCAATCCAAGGTGC
ACCTGGTGGAGCGCCACAATTGTCTCGATTGAAACCATTCTCTGGTGCTTATGCAGAGACAGGAAGCAAAGCTCACTCAA
CAGATTACTACAAGTACAGACAGCCAAACGGTGGAGTTGTAACCAAGAAAGAATATGATGAAGCTCGTGAAAAATGGTTG
AAAGAAAAAGCAGAATCAAATGCTAAATACCAAGAAGATTTAGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.492

100

0.645
  amiA3 Streptococcus thermophilus LMG 18311

64.036

100

0.64
  amiA Streptococcus salivarius strain HSISS4

63.126

100

0.631

Multiple sequence alignment