Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BFM96_RS04835 Genome accession   NZ_CP016953
Coordinates   1015100..1017085 (+) Length   661 a.a.
NCBI ID   WP_068991044.1    Uniprot ID   A0A917A6S5
Organism   Streptococcus himalayensis strain HTS2     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010100..1022085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04825 amiA3 1010978..1012942 (+) 1965 WP_068991037.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04830 amiA 1012979..1014943 (+) 1965 WP_068991042.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04835 amiA3 1015100..1017085 (+) 1986 WP_068991044.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04840 amiA3 1017241..1019220 (+) 1980 WP_068991045.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04845 amiA3 1019500..1021476 (+) 1977 WP_068991046.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73023.32 Da        Isoelectric Point: 4.6212

>NTDB_id=194022 BFM96_RS04835 WP_068991044.1 1015100..1017085(+) (amiA3) [Streptococcus himalayensis strain HTS2]
MKKSKVLALAGITLLSAGFLAACSGSNSNSAGAGKTYSYVYQTDPENLDYLTSSKAAIHDITTNVIDGLLENDRYGNFVP
SMAEDWTVSKDGLTYTYKLRKGVNWYTSEGEEYAEVKAQDFVTGLKYAADKESQALYLIQDSIKGLDDYIKGKNKDFASV
GIKAIDDYTVEYTLNQPESYWNSKTTMGILYPVNEEFLKSQGDKFASATDPTTLLYNGPFILKSITAKSAIEFAKNENYW
DKDNVHIDNVKLSYYDGSDQDSLAKNFADGVYSIARVFPNSASYDAVKKQFSENITYAPQGSASYIVGMNIDRQSYDHTS
KTTDAQKTSTKKALLNKDFRQALAFAFDRESYSAQINGKDGASKVLRNMFVPPTFVAAGDKSFGDIVEADLQSKGDEWKD
VDLSDGQNGLYNPEKAKAEFAKAKEALQAEGVEFPIRLDAPTIKTDKARVARLQSLKQSIEESLGTDNVVIDIQQLSEED
VLNMTYYAPTAAQAGWDISDIVGWIPDFQDPSTYLNIIKPSSGDNTKLFLGFDAGKDNAAAKTVGLTEFEELVNAADNEK
LDLNKRYEKYAAAQAWLTDSALIIPSMSNGATAMLRKTVPFSTAFAWSGNKGADPNVVYKYVELQDEPATTAEYQKALEK
WQKEKAESNAKYQEDLAKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=194022 BFM96_RS04835 WP_068991044.1 1015100..1017085(+) (amiA3) [Streptococcus himalayensis strain HTS2]
ATGAAAAAATCAAAAGTACTAGCATTAGCAGGTATCACCTTGCTTAGTGCAGGATTTTTAGCAGCATGCTCAGGTTCGAA
TTCCAATTCAGCAGGAGCAGGCAAGACTTATTCTTATGTGTATCAAACAGATCCTGAGAATCTGGACTATTTGACATCTA
GTAAGGCAGCTATCCATGATATTACAACGAATGTCATTGATGGTTTGCTCGAAAATGACCGTTATGGGAACTTTGTTCCA
TCTATGGCAGAGGATTGGACTGTCTCAAAAGATGGATTGACCTATACCTATAAACTTCGGAAAGGGGTTAACTGGTACAC
TTCTGAAGGTGAAGAATATGCAGAAGTAAAGGCACAGGATTTTGTCACTGGTCTAAAATATGCAGCAGATAAGGAATCTC
AAGCACTTTACTTGATTCAAGATTCTATCAAGGGCTTGGACGACTATATCAAGGGAAAAAATAAAGACTTTGCTTCCGTT
GGGATTAAAGCGATTGATGACTATACAGTCGAATACACTCTCAATCAACCAGAGAGTTACTGGAATTCTAAAACGACGAT
GGGAATTTTGTACCCTGTAAATGAGGAATTCCTCAAGTCTCAAGGGGATAAGTTTGCCAGTGCGACAGATCCAACAACCT
TGCTTTACAACGGACCGTTCATTCTTAAATCAATTACAGCAAAATCTGCGATTGAATTTGCCAAGAATGAAAATTACTGG
GACAAGGACAATGTTCATATCGATAATGTGAAGTTGTCTTACTATGATGGTTCAGACCAAGATTCATTAGCGAAAAACTT
TGCTGACGGCGTGTATAGTATCGCTCGAGTCTTTCCAAATAGTGCCAGCTATGATGCTGTGAAAAAACAGTTTAGCGAAA
ATATTACCTATGCTCCTCAAGGTTCAGCTAGTTATATCGTTGGGATGAATATTGATCGTCAGTCCTATGACCATACCTCA
AAAACGACAGATGCTCAAAAGACTTCTACGAAAAAAGCACTCTTGAATAAAGATTTCCGTCAAGCGTTAGCCTTTGCCTT
TGACCGCGAAAGCTACTCTGCTCAAATTAACGGAAAAGATGGTGCAAGCAAGGTTTTGAGAAATATGTTTGTTCCTCCAA
CCTTTGTAGCAGCTGGAGACAAGAGTTTTGGAGACATAGTAGAGGCTGACCTTCAAAGCAAGGGGGATGAATGGAAAGAT
GTTGATTTATCAGATGGACAAAACGGTCTTTACAATCCAGAAAAAGCCAAGGCAGAATTTGCCAAAGCTAAAGAAGCTCT
GCAAGCTGAAGGAGTAGAATTCCCAATTCGCTTGGATGCGCCAACGATTAAAACCGATAAAGCGCGTGTTGCTCGTTTGC
AATCGCTTAAACAATCCATCGAAGAATCTTTGGGAACTGACAATGTCGTGATTGATATTCAACAGTTGTCAGAAGAAGAT
GTCTTGAATATGACCTACTATGCACCAACAGCAGCTCAAGCGGGTTGGGACATTTCAGACATCGTCGGCTGGATTCCAGA
CTTCCAAGATCCATCTACCTACCTCAACATTATCAAACCATCTTCTGGGGACAATACGAAATTATTCCTTGGATTTGATG
CAGGCAAGGACAATGCGGCAGCTAAAACAGTTGGCTTGACAGAGTTTGAAGAATTGGTAAATGCAGCAGATAATGAGAAA
TTAGATCTCAATAAACGCTATGAAAAATATGCGGCTGCTCAGGCTTGGCTAACAGATAGTGCCTTGATCATCCCATCAAT
GTCAAATGGTGCAACAGCTATGCTAAGAAAGACGGTTCCATTCTCAACAGCCTTTGCATGGAGTGGAAATAAAGGAGCCG
ATCCAAACGTTGTCTACAAGTATGTTGAATTACAAGACGAGCCGGCAACGACAGCTGAATACCAAAAAGCATTGGAAAAA
TGGCAAAAAGAAAAAGCAGAATCCAATGCCAAATACCAAGAAGATTTGGCAAAACACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.819

100

0.599
  amiA Streptococcus salivarius strain HSISS4

59.517

100

0.596
  amiA3 Streptococcus thermophilus LMG 18311

59.215

100

0.593

Multiple sequence alignment