Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BFM96_RS04825 Genome accession   NZ_CP016953
Coordinates   1010978..1012942 (+) Length   654 a.a.
NCBI ID   WP_068991037.1    Uniprot ID   A0A917EEZ1
Organism   Streptococcus himalayensis strain HTS2     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005978..1017942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04810 nadE 1007251..1008075 (+) 825 WP_068991023.1 ammonia-dependent NAD(+) synthetase -
  BFM96_RS04815 pepC 1008232..1009569 (+) 1338 WP_068991032.1 aminopeptidase C -
  BFM96_RS04820 murQ 1009680..1010597 (-) 918 WP_068991034.1 N-acetylmuramic acid 6-phosphate etherase -
  BFM96_RS04825 amiA3 1010978..1012942 (+) 1965 WP_068991037.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04830 amiA 1012979..1014943 (+) 1965 WP_068991042.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04835 amiA3 1015100..1017085 (+) 1986 WP_068991044.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73123.28 Da        Isoelectric Point: 4.9024

>NTDB_id=194020 BFM96_RS04825 WP_068991037.1 1010978..1012942(+) (amiA3) [Streptococcus himalayensis strain HTS2]
MKKRTGLLAAGILLSTGLMLAACSGNSTGSSSDNTYYYVYSTDPDTLDYVFANRATTSDVTSNLVDGLLESDRYGNLIPS
LAEDWFVSKDGLTYTYKLRKDAKWFTSEGEEYAGVTAQDFVTGLKHAADSKSESLYIVEDSVKGLKDYVDGKIKDFSEVG
VKAIDDYTVEYTLTAPETYWNSKTTMGTLFPVNEEFLKSKGKDYGSPKPDSILYNGPYLLKSWVSKSSIEYVKNPQYYDK
DNVHIEHIKLSYFDGSDQESLIRNFKDGAYTTATLFPNSSSYPAVEKEFAENIIVGSQDATSYYMNFNFDRQSYKHTSKT
NDAQKNATKEAVLNKNFRLAINFAFDRTKYSAQLNGEKLASKTLRNTLVPPSFVQIGDKTYGEVLGEKLVNYGSQWSNIN
LADAQDAYYNPEKAKENFAQAKSELEAKGVQFPIHLDVIVSQTSKTFVDQMSSLKQSIEATLGTENVVIDLQKLSEDDYN
NAGYFATTAAQKDYDLGGGGWSPDFQDPSTYLDTIRVDNGGSIANFGFDPDQANDKIQTVALDTYTNMVKEANKEQDVKM
RYEKYAEAEAWLLDNGVIMPYASLGGRPSVSRIVPFSSANADVGTKGVGTYYKYRKVQKDIVVAKDWETAREKWRKEKAE
SNKKAQEDLVKHIR

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=194020 BFM96_RS04825 WP_068991037.1 1010978..1012942(+) (amiA3) [Streptococcus himalayensis strain HTS2]
ATGAAAAAAAGAACAGGACTATTAGCGGCTGGTATCTTACTGAGTACTGGGCTGATGCTGGCAGCTTGTAGCGGAAATAG
CACAGGAAGTTCATCAGACAACACCTACTATTATGTGTATAGTACAGATCCGGATACGCTTGATTATGTATTTGCCAATC
GAGCAACAACTTCAGATGTGACCAGTAACCTGGTTGATGGGTTGCTTGAAAGTGACCGCTATGGGAATTTAATCCCGTCT
CTAGCTGAGGATTGGTTCGTTTCAAAAGATGGACTGACCTATACTTATAAACTTCGCAAAGATGCCAAATGGTTTACCTC
TGAGGGTGAAGAGTATGCTGGTGTGACTGCCCAAGACTTTGTGACAGGTTTGAAGCATGCGGCCGATAGCAAGTCAGAAT
CCCTGTATATTGTCGAAGATTCCGTCAAGGGCTTAAAAGACTATGTTGATGGGAAAATCAAGGATTTCAGCGAAGTTGGT
GTAAAGGCAATTGATGATTATACGGTCGAATATACTCTCACGGCTCCCGAAACCTATTGGAATTCAAAAACAACCATGGG
AACGCTATTTCCTGTCAATGAGGAATTTTTGAAGTCCAAAGGAAAAGACTACGGCAGTCCCAAGCCAGATAGTATCCTTT
ATAATGGTCCCTATCTCTTGAAATCATGGGTTTCTAAGTCCTCTATCGAATATGTGAAAAATCCACAGTACTATGATAAG
GATAATGTGCATATCGAGCATATCAAGTTATCTTATTTTGACGGTTCAGACCAAGAGTCCTTGATTCGAAACTTTAAGGA
CGGGGCCTATACAACGGCTACCTTGTTCCCTAACAGTTCTAGCTATCCAGCGGTTGAAAAAGAGTTTGCAGAGAATATCA
TTGTTGGCTCACAAGATGCGACATCTTATTACATGAATTTTAATTTCGATCGTCAATCTTACAAACATACTTCTAAAACA
AATGATGCACAAAAGAATGCGACGAAAGAAGCAGTGCTCAATAAAAACTTCCGTCTAGCCATTAATTTTGCTTTTGACCG
AACGAAATACAGTGCCCAGCTAAATGGTGAAAAGTTAGCCAGCAAGACGTTACGAAATACCTTGGTACCACCAAGTTTTG
TGCAAATTGGGGACAAGACCTACGGAGAAGTTCTTGGTGAGAAATTGGTCAACTACGGTAGTCAATGGAGCAATATCAAT
CTTGCAGATGCTCAGGATGCCTACTATAATCCAGAAAAAGCCAAAGAAAACTTTGCCCAAGCCAAGTCTGAATTGGAAGC
TAAAGGAGTTCAATTCCCGATTCATTTGGATGTCATCGTTTCACAAACAAGCAAAACCTTTGTGGATCAGATGAGTTCCT
TGAAGCAATCTATTGAAGCGACGTTAGGAACCGAAAATGTTGTCATTGACCTTCAAAAATTATCAGAGGACGACTATAAT
AATGCAGGGTATTTTGCAACCACGGCTGCTCAAAAAGATTACGATCTTGGCGGAGGCGGTTGGTCTCCAGACTTCCAAGA
TCCATCGACTTATCTTGATACCATTCGAGTGGATAATGGAGGCTCTATTGCCAATTTTGGTTTTGATCCTGATCAAGCCA
ATGATAAGATTCAAACAGTTGCTCTAGATACCTATACGAACATGGTCAAGGAAGCCAATAAAGAGCAAGATGTTAAAATG
CGTTATGAGAAATATGCAGAAGCTGAAGCTTGGTTGCTAGATAACGGCGTGATTATGCCTTATGCCTCTCTGGGTGGTCG
CCCATCTGTCTCACGGATTGTTCCATTTTCTTCTGCAAATGCAGATGTCGGAACCAAAGGTGTCGGGACTTACTACAAGT
ATCGAAAGGTTCAAAAAGATATTGTAGTCGCCAAAGATTGGGAGACTGCTCGTGAAAAATGGCGAAAAGAAAAGGCCGAA
TCCAATAAAAAGGCACAAGAGGATTTAGTGAAACATATTCGCTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

54.394

100

0.549
  amiA Streptococcus salivarius strain HSISS4

54.242

100

0.547

Multiple sequence alignment