Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BFM96_RS04830 Genome accession   NZ_CP016953
Coordinates   1012979..1014943 (+) Length   654 a.a.
NCBI ID   WP_068991042.1    Uniprot ID   A0A917EGF9
Organism   Streptococcus himalayensis strain HTS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1007979..1019943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04815 pepC 1008232..1009569 (+) 1338 WP_068991032.1 aminopeptidase C -
  BFM96_RS04820 murQ 1009680..1010597 (-) 918 WP_068991034.1 N-acetylmuramic acid 6-phosphate etherase -
  BFM96_RS04825 amiA3 1010978..1012942 (+) 1965 WP_068991037.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04830 amiA 1012979..1014943 (+) 1965 WP_068991042.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04835 amiA3 1015100..1017085 (+) 1986 WP_068991044.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04840 amiA3 1017241..1019220 (+) 1980 WP_068991045.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72785.11 Da        Isoelectric Point: 4.7749

>NTDB_id=194021 BFM96_RS04830 WP_068991042.1 1012979..1014943(+) (amiA) [Streptococcus himalayensis strain HTS2]
MKTKKWLVTAGVLVSAGVLLTACSGGSSTGDSGNTYSYVYTLDPDTLDYTFANRASTSEVTSNLVDGLLENDQYGNLVPS
LAEDWTVSKDGLTYTYKLRKDAKWYTSEGEEYADVKAQDFVTGLKHAVDSKSEALYIVEDSIKGLKEYAKGENKDFSSVG
IKAVDDYTVEYTLNAPESYWNSKTTMGILFPINEEFLKSKGKEFGSAKTDSILSNGPYLLKSWVTKSSMEYAKNPNYYDK
DNVHIDNVKLAYFDGSDLESLARNFKDGAYTGAVLYPNTTSYPAIEKEFKDYIYVSQQDATSYYFNYNLDRKSYKHTSKK
DDAQKAATNEAILNKNFRQAIKFALDKTGMAAQMNGEKLATATLRNTLVPPTFVQIGDKNYGDVVGEKLVNYGKEWADIN
LADATNAYYNPTKAKEKMAQAKTELEAKGVQFPIHLDVLVEETDKNDVARKSSIKQSIEAALGAENVVIDLQNASEDEVN
NASYFATRAAQKDYDFDVSGWGPDFQDPSTYLDILNIENGGMLQNIGLEPGQDNAKIQAVGLDKYTDMLKEANKEQDVKV
RYEKYAEAEAWLQDSALIIPTVSKGGRPQLSKVVPFSSPTSDVGTKGDATIFKYKQVQKDIVTVKDYETAREKWVKEKAE
SNAKYQEDLAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=194021 BFM96_RS04830 WP_068991042.1 1012979..1014943(+) (amiA) [Streptococcus himalayensis strain HTS2]
ATGAAAACAAAAAAATGGCTCGTAACAGCTGGTGTTCTCGTGAGTGCAGGAGTACTCTTAACTGCTTGTAGTGGCGGAAG
CTCAACGGGTGATTCAGGCAATACCTATTCCTACGTTTACACTTTGGATCCAGATACGCTAGATTATACCTTTGCTAACC
GTGCCTCAACTTCTGAGGTGACCAGTAACTTGGTGGATGGCCTTCTTGAAAATGACCAATATGGAAATTTGGTTCCGTCT
TTAGCAGAAGATTGGACAGTTTCAAAAGATGGGTTGACCTATACTTACAAACTCCGTAAAGATGCCAAATGGTACACATC
TGAAGGTGAAGAATACGCAGATGTCAAAGCTCAAGACTTTGTTACAGGTTTGAAACACGCAGTTGATTCTAAATCAGAAG
CCCTCTACATCGTTGAAGACTCTATCAAAGGTTTGAAAGAGTACGCTAAAGGGGAAAATAAGGATTTCAGCAGTGTCGGC
ATTAAAGCTGTTGATGACTATACGGTCGAATATACGTTGAATGCTCCTGAATCTTACTGGAATTCAAAAACAACCATGGG
AATTCTCTTCCCAATCAACGAAGAATTCTTGAAATCAAAAGGTAAAGAGTTTGGTTCTGCAAAGACAGATAGCATTCTTT
CAAACGGACCTTACCTGTTGAAGTCTTGGGTTACTAAATCTTCCATGGAATATGCGAAAAATCCAAACTATTATGATAAA
GACAATGTTCATATCGACAATGTGAAGTTGGCTTACTTTGACGGATCAGATTTGGAATCTCTGGCACGTAACTTTAAAGA
TGGTGCCTACACAGGTGCAGTTCTCTATCCAAATACCACGAGCTACCCAGCGATTGAAAAAGAGTTCAAGGATTATATCT
ATGTCTCTCAACAAGATGCGACGAGCTATTATTTCAATTACAACTTAGATCGGAAATCTTACAAGCATACTTCTAAGAAA
GATGATGCCCAAAAAGCAGCAACCAATGAAGCAATTTTAAACAAAAACTTCCGTCAAGCCATTAAATTTGCTCTGGATAA
GACAGGGATGGCTGCACAGATGAATGGTGAAAAATTAGCTACTGCAACATTGCGGAATACTCTGGTACCACCAACCTTCG
TACAAATCGGAGACAAGAATTACGGTGATGTGGTCGGTGAAAAGCTAGTCAACTACGGCAAAGAGTGGGCAGACATCAAC
TTGGCAGATGCGACCAATGCCTACTACAATCCGACAAAAGCAAAAGAAAAAATGGCGCAAGCCAAGACTGAATTGGAAGC
CAAAGGAGTTCAGTTCCCAATTCATTTGGATGTACTCGTAGAAGAAACAGATAAGAACGATGTTGCTAGAAAGAGCTCCA
TCAAACAATCGATTGAAGCAGCATTAGGTGCAGAGAATGTCGTGATTGATCTTCAAAATGCTTCTGAGGATGAGGTGAAT
AACGCTAGTTACTTTGCAACAAGGGCTGCTCAAAAAGACTATGACTTTGATGTATCAGGTTGGGGGCCAGACTTCCAAGA
CCCATCAACCTACCTAGATATTTTGAACATAGAAAATGGTGGAATGCTTCAAAATATTGGTTTGGAACCAGGTCAAGACA
ATGCGAAAATTCAAGCCGTTGGCTTAGATAAATACACAGATATGCTCAAGGAAGCCAATAAAGAGCAAGATGTTAAAGTG
CGTTATGAAAAATACGCAGAAGCAGAAGCTTGGTTGCAAGATAGCGCCCTTATCATTCCAACTGTTTCAAAAGGTGGACG
TCCACAATTATCTAAGGTTGTCCCATTCTCCTCACCGACATCTGATGTCGGAACAAAAGGGGATGCAACCATCTTCAAAT
ACAAACAAGTCCAAAAAGACATTGTGACAGTAAAAGATTACGAAACCGCTCGTGAAAAATGGGTGAAAGAAAAAGCAGAA
TCCAATGCGAAATACCAAGAAGATTTAGCAAAACACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.485

100

0.54
  amiA3 Streptococcus thermophilus LMD-9

52.959

100

0.534
  amiA3 Streptococcus thermophilus LMG 18311

52.656

100

0.531

Multiple sequence alignment