Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BFM96_RS04855 Genome accession   NZ_CP016953
Coordinates   1023033..1023959 (+) Length   308 a.a.
NCBI ID   WP_068991054.1    Uniprot ID   A0A917A6N8
Organism   Streptococcus himalayensis strain HTS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018033..1028959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04845 amiA3 1019500..1021476 (+) 1977 WP_068991046.1 peptide ABC transporter substrate-binding protein Regulator
  BFM96_RS04850 amiC 1021537..1023033 (+) 1497 WP_068991047.1 ABC transporter permease Regulator
  BFM96_RS04855 amiD 1023033..1023959 (+) 927 WP_068991054.1 oligopeptide ABC transporter permease OppC Regulator
  BFM96_RS04860 amiE 1023968..1025035 (+) 1068 WP_068991057.1 ABC transporter ATP-binding protein Regulator
  BFM96_RS04865 amiF 1025046..1025969 (+) 924 WP_068991060.1 ATP-binding cassette domain-containing protein Regulator
  BFM96_RS10825 - 1026103..1027150 (+) 1048 WP_145939709.1 IS630 family transposase -
  BFM96_RS04880 - 1027356..1028321 (-) 966 WP_068991062.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34410.32 Da        Isoelectric Point: 9.4619

>NTDB_id=194026 BFM96_RS04855 WP_068991054.1 1023033..1023959(+) (amiD) [Streptococcus himalayensis strain HTS2]
MATIDKSKFAFVKRDDFASETIDAPAYSYWKSVMRQFMKKKSTILMLGILIAIVVISFVYPIFSDFDYNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISIIATVINMVIGVLVGGIWGVSKSVDRIMLEVYNVLSNIPSLLIIIV
LTYSIGAGFWNLIFAMTVTSWIGIAYSIRVQILRYRDLEYNLASQTLGTPTIKIVTKNILPQLISVIVTVTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=194026 BFM96_RS04855 WP_068991054.1 1023033..1023959(+) (amiD) [Streptococcus himalayensis strain HTS2]
ATGGCTACGATTGATAAAAGTAAGTTTGCATTCGTCAAACGAGATGATTTTGCCTCTGAAACCATTGATGCGCCAGCCTA
TTCCTATTGGAAATCGGTGATGCGCCAGTTTATGAAGAAAAAATCAACAATCCTAATGCTAGGGATTTTGATTGCCATTG
TTGTCATTAGTTTTGTATATCCTATTTTTTCTGATTTTGATTATAACGATGTCAGCAAGGTAAATGACTTCAGTGCTCGT
TACATCAAGCCTAATGCAGAGCATTGGTTTGGGACAGACAGCAATGGGAAATCCTTATTTGATGGTGTTTGGTTTGGAGC
TAGAAATTCGATTTTAATTTCCATTATCGCAACGGTCATCAATATGGTCATCGGGGTTCTTGTCGGTGGTATTTGGGGTG
TTTCCAAGTCCGTTGACCGGATTATGCTAGAAGTGTATAATGTCCTTTCTAACATTCCTTCTCTATTGATTATCATTGTC
TTGACCTACTCTATCGGGGCTGGTTTCTGGAATTTGATTTTTGCGATGACGGTGACAAGTTGGATTGGGATTGCCTATTC
TATTCGGGTGCAAATTTTGCGCTACCGAGACCTAGAGTACAACCTTGCCAGTCAAACTTTGGGAACACCAACGATAAAAA
TCGTCACAAAGAATATCCTTCCTCAGTTGATTTCTGTTATTGTGACGGTCACGTCACAGATGCTTCCAAGTTTCATTTCT
TACGAAGCCTTCCTGTCCTTCTTTGGATTGGGGCTACCTGTTACCGTACCAAGCTTGGGACGTTTGATTTCAGATTATTC
ACAAAACGTGACAACCAATGCTTATTTGTTCTGGATTCCATTAACAACTTTGATTTTGGTTTCCCTTTCCCTTTTCATCG
TTGGGCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

81.494

100

0.815
  amiD Streptococcus thermophilus LMG 18311

80.195

100

0.802
  amiD Streptococcus thermophilus LMD-9

80.195

100

0.802

Multiple sequence alignment