Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCD84_RS11705 Genome accession   NZ_CP021520
Coordinates   2076103..2076630 (-) Length   175 a.a.
NCBI ID   WP_002229985.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2071103..2081630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS11690 (CCD84_11915) - 2071398..2072405 (+) 1008 WP_149323749.1 IS5 family transposase -
  CCD84_RS11700 (CCD84_11930) polA 2073162..2075978 (-) 2817 WP_002229990.1 DNA polymerase I -
  CCD84_RS11705 (CCD84_11935) luxS 2076103..2076630 (-) 528 WP_002229985.1 S-ribosylhomocysteine lyase Regulator
  CCD84_RS11710 (CCD84_11940) - 2076652..2077071 (-) 420 WP_002229986.1 DUF2251 domain-containing protein -
  CCD84_RS11715 (CCD84_11945) - 2077097..2078113 (-) 1017 WP_002229989.1 YeiH family protein -
  CCD84_RS11720 (CCD84_11950) cyaY 2078140..2078463 (-) 324 WP_002218099.1 iron donor protein CyaY -
  CCD84_RS11725 (CCD84_11955) - 2078534..2078704 (+) 171 WP_002218098.1 lipoprotein -
  CCD84_RS11730 (CCD84_11960) lysA 2078715..2079935 (+) 1221 WP_002229987.1 diaminopimelate decarboxylase -
  CCD84_RS11735 (CCD84_11965) - 2079995..2080087 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  CCD84_RS11740 (CCD84_11970) - 2080084..2081619 (-) 1536 WP_002229988.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19454.30 Da        Isoelectric Point: 5.9132

>NTDB_id=194015 CCD84_RS11705 WP_002229985.1 2076103..2076630(-) (luxS) [Neisseria meningitidis strain 11-7]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADTWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNAQSAKNAV

Nucleotide


Download         Length: 528 bp        

>NTDB_id=194015 CCD84_RS11705 WP_002229985.1 2076103..2076630(-) (luxS) [Neisseria meningitidis strain 11-7]
ATGCCCCTGTTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGATACCATTACCGTATTCGACCTGCGCTTTTGCGTTCCTAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGCTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATACGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGTTGACG
CTGGATGAAGGGCTGCTGAACGCCCAATCCGCCAAAAATGCCGTCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

95.429

0.731

Multiple sequence alignment