Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   BFM96_RS04215 Genome accession   NZ_CP016953
Coordinates   873792..874169 (+) Length   125 a.a.
NCBI ID   WP_068990726.1    Uniprot ID   A0A917EHA8
Organism   Streptococcus himalayensis strain HTS2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868792..879169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS04195 - 871117..871482 (+) 366 WP_068990721.1 DUF1033 family protein -
  BFM96_RS04200 comGA/cglA/cilD 871544..872485 (+) 942 WP_068990723.1 competence type IV pilus ATPase ComGA Machinery gene
  BFM96_RS04205 comYB 872406..873449 (+) 1044 WP_068994164.1 competence type IV pilus assembly protein ComGB Machinery gene
  BFM96_RS04210 comGC/cglC 873461..873781 (+) 321 WP_068994166.1 competence type IV pilus major pilin ComGC Machinery gene
  BFM96_RS04215 comYD 873792..874169 (+) 378 WP_068990726.1 competence type IV pilus minor pilin ComGD Machinery gene
  BFM96_RS04220 comGE/cglE 874141..874431 (+) 291 WP_068990728.1 competence type IV pilus minor pilin ComGE Machinery gene
  BFM96_RS04225 comGF/cglF 874397..874855 (+) 459 WP_145939743.1 competence type IV pilus minor pilin ComGF Machinery gene
  BFM96_RS04230 comGG 874827..875291 (+) 465 WP_068990735.1 competence type IV pilus minor pilin ComGG -
  BFM96_RS04235 comYH 875335..876282 (+) 948 WP_068990737.1 class I SAM-dependent methyltransferase Machinery gene
  BFM96_RS04240 - 876341..877531 (+) 1191 WP_068990741.1 acetate kinase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14134.97 Da        Isoelectric Point: 6.4656

>NTDB_id=194013 BFM96_RS04215 WP_068990726.1 873792..874169(+) (comYD) [Streptococcus himalayensis strain HTS2]
MLESLLTLFITSFVLLLLSNSVHASFEKVQNQIFFLEFENFYRESQQLSASSQEKLDVTIEQGRISNGYRQLAIPSSVQA
PDYQVLHFDRAGGNSSLSKIVFQTKDETVSYQLYIGNGKIKKTSS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=194013 BFM96_RS04215 WP_068990726.1 873792..874169(+) (comYD) [Streptococcus himalayensis strain HTS2]
ATGTTAGAAAGTTTACTCACCCTCTTCATTACTAGTTTTGTACTCTTACTGTTATCAAACTCGGTGCATGCCTCGTTTGA
AAAGGTACAGAATCAGATTTTCTTCTTAGAATTTGAGAATTTCTACCGCGAAAGTCAGCAGTTAAGTGCTTCCTCGCAGG
AAAAACTGGATGTAACGATTGAGCAAGGGAGAATTTCAAATGGCTACCGTCAGCTAGCTATTCCAAGTTCGGTGCAGGCT
CCAGATTACCAAGTTTTGCATTTTGACCGAGCGGGTGGGAATTCTTCGCTGAGCAAGATTGTTTTTCAAACGAAGGATGA
AACAGTTAGTTATCAATTATATATCGGCAATGGAAAAATTAAGAAAACAAGCAGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

62.4

100

0.624
  comGD/cglD Streptococcus mitis SK321

54.098

97.6

0.528
  comGD/cglD Streptococcus pneumoniae D39

52.459

97.6

0.512
  comGD/cglD Streptococcus mitis NCTC 12261

52.459

97.6

0.512
  comGD/cglD Streptococcus pneumoniae R6

52.459

97.6

0.512
  comGD/cglD Streptococcus pneumoniae Rx1

52.459

97.6

0.512
  comYD Streptococcus mutans UA140

50

100

0.504
  comYD Streptococcus mutans UA159

50

100

0.504
  comGD/cglD Streptococcus pneumoniae TIGR4

51.639

97.6

0.504

Multiple sequence alignment