Detailed information NTG0193344

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: XJ27_RS21965
• Genome accession: NZ_CP016878
• Coordinates: 4894759..4896015 (-)
• Length: 418 a.a.
• NCBI ID: WP_074058082.1
• Uniprot ID: -
• Organism: Xanthomonas hortorum strain B07-007
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4896880..4897842	4894759..4896015	flank	865

Gene organization within MGE regions

Location: 4894759..4897842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XJ27_RS21965 (XJ27_20980)	pilC	4894759..4896015 (-)	1257	WP_074058082.1	type II secretion system F family protein	Machinery gene
XJ27_RS21970 (XJ27_20985)	pilA/pilAI	4896378..4896785 (+)	408	WP_074058081.1	pilin	Machinery gene
XJ27_RS21975 (XJ27_20990)	-	4896880..4897842 (-)	963	WP_006448937.1	IS1595 family transposase	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45482.75 Da
• Isoelectric Point: 10.3304

>NTDB_id=193344 XJ27_RS21965 WP_074058082.1 4894759..4896015(-) (pilC) [Xanthomonas hortorum strain B07-007]
MSAVRSAIKKKSVSIADQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGINPTVVKVKPKPLFGAAGKKVTAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGESAGVLET
VLDTVASYKENIEALKGKIKKALFYPTMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVSWWWAL
LIVVVGAVVGLVFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEEA
VLRMRNDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=193344 XJ27_RS21965 WP_074058082.1 4894759..4896015(-) (pilC) [Xanthomonas hortorum strain B07-007]
ATGTCAGCAGTGCGTAGTGCAATCAAGAAAAAGTCGGTCTCTATCGCCGACCAGATGAGCCCATTTGTCTGGGAGGGGAC
CGACAAGCGTGGCGTGAAGATGAAAGGCGAACAGACTGCCCGAAACGCAAACCTGCTACGCGCCGAGTTGCGTCGCCAAG
GCATCAATCCAACGGTGGTCAAGGTCAAACCGAAGCCGCTATTTGGCGCGGCAGGCAAGAAGGTCACTGCAAAGGACATC
TCGTTTTTCAGCCGGCAGATGGCGACGATGATGAAATCGGGTGTACCTATTGTAGGAGCCCTTGAAATCATTGGGAGTGG
TCAAAAAAACCCGCGTATGCGAACAATGGTAGGGCAGATCCGTACGGATATCGAGGGTGGCTCCTCGCTCCACGAAGCGA
TTAGCAAACATCCTGTTCAATTCGACGAACTTTATCGAAATCTGGTGAGAGCCGGCGAGAGCGCGGGCGTTTTAGAGACA
GTTCTTGATACCGTAGCAAGCTACAAAGAAAACATCGAAGCACTCAAAGGCAAGATCAAAAAAGCCCTGTTCTACCCAAC
CATGGTGATGGCGGTAGCATTATTAGTCAGCTCCATTTTGCTCATCTGGGTAGTTCCACAATTTGAGGATGTTTTCAAAG
GCTTTGGTGCCGAGCTGCCAGCCTTCACTCAGATGATTGTGAATGCATCGCGCTTCATGGTCTCCTGGTGGTGGGCGCTA
CTCATCGTGGTCGTTGGAGCCGTTGTCGGTCTTGTTTTCGCCTATAAGCGTTCCCCAGCTATGCAGCACGGCATGGACCG
GCTGATTTTGAAGGTGCCTGTCATCGGTCAAATCATGCATAACAGCTCTGTAGCACGCTTCGCCAGAACGACAGCCGTGA
CGTTCAAGGCAGGCGTGCCTTTGGTGGAAGCGCTGAGTATCGTCGCTGGCGCCACGGGCAACTCAGTTTACGAAGAGGCC
GTGCTGCGCATGCGTAACGATGTGTCCGTTGGTTATCCTGTGAATGTGGCCATGAAGCAAGTCAACCTCTTCCCGCACAT
GGTGGTCCAGATGACCGCTATTGGTGAGGAAGCTGGTGCGCTGGATGCGATGCTATTCAAGGTGGCCGAGTATTTCGAGC
AGGAGGTCAACAATGCGGTTGACGCACTCAGCAGCCTGCTTGAACCCCTGATCATGGTCTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.518	95.215	0.51
pilC	Legionella pneumophila strain ERS1305867	52.099	96.89	0.505
pilC	Acinetobacter baylyi ADP1	50.75	95.694	0.486
pilC	Acinetobacter baumannii D1279779	49.877	97.368	0.486
pilG	Neisseria gonorrhoeae MS11	42.716	96.89	0.414
pilG	Neisseria meningitidis 44/76-A	42.222	96.89	0.409
pilC	Vibrio cholerae strain A1552	41.562	94.976	0.395
pilC	Vibrio campbellii strain DS40M4	39.012	96.89	0.378