Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BE841_RS08035 Genome accession   NZ_CP016868
Coordinates   1830133..1832229 (-) Length   698 a.a.
NCBI ID   WP_070322471.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825133..1837229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE841_RS08015 (BE841_08015) - 1826080..1826511 (-) 432 WP_011215101.1 universal stress protein -
  BE841_RS08020 (BE841_08020) - 1826616..1828067 (-) 1452 WP_011215100.1 SPOR domain-containing protein -
  BE841_RS08025 (BE841_08025) aroB 1828064..1829173 (-) 1110 WP_011215099.1 3-dehydroquinate synthase -
  BE841_RS08030 (BE841_08030) aroK 1829160..1829687 (-) 528 WP_010946667.1 shikimate kinase AroK -
  BE841_RS08035 (BE841_08035) pilQ 1830133..1832229 (-) 2097 WP_070322471.1 type IV pilus secretin PilQ Machinery gene
  BE841_RS08040 (BE841_08040) pilP 1832233..1832817 (-) 585 WP_011215097.1 pilus assembly protein PilP Machinery gene
  BE841_RS08045 (BE841_08045) pilO 1832814..1833413 (-) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  BE841_RS08050 (BE841_08050) pilN 1833427..1833975 (-) 549 WP_011215095.1 PilN domain-containing protein Machinery gene
  BE841_RS08055 (BE841_08055) pilM 1833979..1835043 (-) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  BE841_RS08060 (BE841_08060) ravI 1835460..1836467 (+) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77457.72 Da        Isoelectric Point: 9.5345

>NTDB_id=193049 BE841_RS08035 WP_070322471.1 1830133..1832229(-) (pilQ) [Legionella pneumophila subsp. pneumophila strain FFI102]
MRKIIAILILISASLSMAYSKDNSLISVKVLPLPENRVRIDFQFSKPLKQLPASFITQKPPRLVLDFISTDMQIPSDQKT
KTIQLGSLHSYNIVAVGDRVRAILEPDRSVSYSGSTAGSVYSLVLNGKSNDLFENSKEVFITNQVVNAKHEIKRIDFRGI
EKQGGRVLIDVSDTGIPIDVTQVGKEIVVNFLNTKIPLNLMKRYDVSDFHSPVQIITMQQEGKKVRMTILSKGDYGHFVY
QVNKQFMVDVFPLTAEEIRQAKLKKQVFTGKRISLNFQNISIRAVLQLLADFTGINMVVSDKVQGDITLRLNDIPWDQAL
DIILTTQGLDKRRKGNVMLIDTKASMDKMEEEQLKSQQTIEKLEPIRSDLIQINYAKAADIAVLIKDKQNSLLSDRGKIS
VDARTNTIWIQDTGTKIEEVRELIKQLDIPVKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPA
NVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQE
ATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLGVPAIITKEIQTNVLVNNGQTIVLGGIYKQDKN
KVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRIITNALSITTIEGREKDVYK

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=193049 BE841_RS08035 WP_070322471.1 1830133..1832229(-) (pilQ) [Legionella pneumophila subsp. pneumophila strain FFI102]
GTGAGAAAAATTATCGCGATTTTGATATTAATTAGTGCCAGTTTGAGTATGGCATATTCTAAAGATAATTCGCTCATTTC
AGTAAAAGTATTGCCATTGCCCGAAAACAGAGTGCGTATTGATTTTCAATTTTCCAAGCCCTTAAAGCAGTTGCCTGCAA
GCTTTATTACTCAAAAGCCGCCCCGTTTGGTGTTAGATTTTATCAGCACTGATATGCAAATTCCTTCGGATCAGAAAACT
AAAACTATTCAATTAGGCTCATTACACAGTTATAACATTGTTGCTGTTGGGGATAGAGTAAGGGCCATATTGGAACCGGA
TCGTTCAGTATCCTATTCTGGCAGTACGGCGGGTTCCGTTTATAGCCTTGTCCTGAATGGTAAAAGCAATGATTTATTTG
AAAATAGCAAGGAGGTATTCATAACGAACCAGGTTGTGAACGCCAAGCATGAAATTAAAAGAATTGATTTTCGTGGTATA
GAAAAGCAGGGCGGTAGAGTTTTAATTGATGTTTCTGATACGGGTATTCCAATTGATGTAACTCAAGTTGGGAAAGAAAT
AGTCGTTAATTTCCTGAATACCAAGATCCCTTTGAATTTAATGAAACGGTATGATGTTTCTGATTTTCACAGCCCTGTGC
AGATTATTACGATGCAACAGGAAGGCAAAAAGGTTCGCATGACCATCCTCAGCAAAGGGGATTATGGACATTTTGTTTAT
CAGGTCAATAAACAATTTATGGTCGATGTCTTTCCTTTAACTGCGGAAGAAATTCGTCAGGCGAAATTGAAGAAACAGGT
ATTTACTGGCAAACGTATTTCTTTAAATTTCCAGAATATTAGTATTCGAGCTGTACTTCAATTGCTGGCAGATTTTACTG
GAATCAATATGGTTGTCAGCGACAAAGTACAAGGAGATATTACGCTTAGATTAAATGATATCCCCTGGGATCAGGCTCTG
GATATCATTTTAACCACACAAGGGCTAGATAAGCGCAGAAAGGGCAACGTCATGTTGATAGATACCAAGGCCTCCATGGA
TAAAATGGAGGAAGAACAGCTCAAAAGTCAACAGACAATTGAAAAACTTGAGCCTATCCGTTCTGATTTAATACAAATTA
ATTATGCAAAGGCAGCAGATATTGCTGTTTTGATCAAGGATAAGCAAAATTCCCTATTATCAGACAGGGGAAAAATAAGT
GTTGATGCCAGAACGAATACAATCTGGATTCAGGATACTGGCACCAAAATTGAGGAAGTAAGGGAACTGATAAAGCAATT
GGATATCCCCGTTAAGCAAGTGCTTATTGAGGCAAGAATTGTTGAAGTGACTAAAGATTTTAGCCAGGATATTGGGATAC
GCTGGGGAGTATCAAGACCAACTCACTTAAGTGGTACACTGGAAGGTGCTAACGAGTTAGCGAGAGGCACAGCACCAGCC
AATGTTGTCCCCTTGGAAAGAAGATTAAATCTTGATTTGGCAGCCGCTCCTTTAACCGGAGCTACACCGGCCTCGGTAGG
TATTGCGCTAGCTAAACTTAATGATAACATTCTGCTTGATCTGGAATTGTCTGCTTTGGAAAGCGAAGGGCGTGCTGAAT
TAATATCCAGTCCTCGCTTGATTACTACGAATCAACAGGCAGCAGTCATAGAGTCTGGTGAGGAGATTCCCTATCAGGAG
GCAACATCAAGTGGAGCGACTGCTGTTGCATTTAAAAAAGCGGTATTGAGTTTGAAAGTTACCCCGCAAATTACGCCTGA
TGGCAAAATTTTGATGGATTTACAGATAAATCAGGATACTCCTTCCCCACAAACATTCCTTGGTGTTCCAGCAATAATAA
CAAAGGAGATTCAGACGAATGTTCTGGTTAATAATGGACAAACCATAGTACTTGGGGGTATTTATAAGCAAGATAAGAAC
AAGGTAATCAATAGAATTCCTTTCTTTGGTGAGTTGCCTGTTGTCGGTATTTTATTTAGTAATAGACAAATCACATTGAA
AAATGAAGAATTACTTATCTTTATTACACCAAGAATAATAACGAATGCCTTATCGATTACAACGATAGAGGGACGCGAGA
AAGATGTTTATAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(370-433)

Bacterial type II and III secretion system protein (Secretin)

(525-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

99.713

100

0.997
  pilQ Legionella pneumophila strain ERS1305867

99.57

100

0.996
  pilQ Pseudomonas aeruginosa PAK

37.589

100

0.38
  comQ Acinetobacter baylyi ADP1

38.428

98.424

0.378
  pilQ Acinetobacter baumannii D1279779

34.959

100

0.37
  pilQ Acinetobacter baumannii strain A118

34.959

100

0.37

Multiple sequence alignment