Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   BE841_RS08040 Genome accession   NZ_CP016868
Coordinates   1832233..1832817 (-) Length   194 a.a.
NCBI ID   WP_011215097.1    Uniprot ID   Q5WXX8
Organism   Legionella pneumophila subsp. pneumophila strain FFI102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1827233..1837817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE841_RS08025 (BE841_08025) aroB 1828064..1829173 (-) 1110 WP_011215099.1 3-dehydroquinate synthase -
  BE841_RS08030 (BE841_08030) aroK 1829160..1829687 (-) 528 WP_010946667.1 shikimate kinase AroK -
  BE841_RS08035 (BE841_08035) pilQ 1830133..1832229 (-) 2097 WP_070322471.1 type IV pilus secretin PilQ Machinery gene
  BE841_RS08040 (BE841_08040) pilP 1832233..1832817 (-) 585 WP_011215097.1 pilus assembly protein PilP Machinery gene
  BE841_RS08045 (BE841_08045) pilO 1832814..1833413 (-) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  BE841_RS08050 (BE841_08050) pilN 1833427..1833975 (-) 549 WP_011215095.1 PilN domain-containing protein Machinery gene
  BE841_RS08055 (BE841_08055) pilM 1833979..1835043 (-) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  BE841_RS08060 (BE841_08060) ravI 1835460..1836467 (+) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22070.68 Da        Isoelectric Point: 10.4471

>NTDB_id=193050 BE841_RS08040 WP_011215097.1 1832233..1832817(-) (pilP) [Legionella pneumophila subsp. pneumophila strain FFI102]
MIIKNNQTLILGFFGNSLRVSLTAATFRKSLLMGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=193050 BE841_RS08040 WP_011215097.1 1832233..1832817(-) (pilP) [Legionella pneumophila subsp. pneumophila strain FFI102]
ATGATAATTAAAAATAACCAGACGCTTATATTAGGCTTTTTCGGAAATTCTCTGCGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGCCTATTGATGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCTCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5WXX8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943


Multiple sequence alignment