Detailed information NTG0192215

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BEN31_RS19405
• Genome accession: NZ_CP016784
• Coordinates: 3609579..3610265 (+)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain PDSLzg-1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3604579..3615265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN31_RS18245 (BEN31_18245)	degS	3604733..3605908 (+)	1176	WP_003213166.1	sensor histidine kinase	Regulator
BEN31_RS18250 (BEN31_18250)	degU	3605973..3606662 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
BEN31_RS18255 (BEN31_18255)	-	3606880..3607722 (+)	843	WP_034660152.1	DegV family protein	-
BEN31_RS18260 (BEN31_18260)	comFA	3607843..3609222 (+)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
BEN31_RS18265 (BEN31_18265)	-	3609289..3609582 (+)	294	WP_060597398.1	late competence development ComFB family protein	-
BEN31_RS19405 (BEN31_18270)	comFC	3609579..3610265 (+)	687	WP_189288297.1	ComF family protein	Machinery gene
BEN31_RS18275 (BEN31_18275)	-	3610322..3610741 (+)	420	WP_066031681.1	TIGR03826 family flagellar region protein	-
BEN31_RS18280 (BEN31_18280)	flgM	3610821..3611084 (+)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
BEN31_RS18285 (BEN31_18285)	-	3611103..3611585 (+)	483	WP_034660146.1	flagellar protein FlgN	-
BEN31_RS18290 (BEN31_18290)	flgK	3611601..3613121 (+)	1521	WP_060597394.1	flagellar hook-associated protein FlgK	-
BEN31_RS18295 (BEN31_18295)	flgL	3613131..3614042 (+)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
BEN31_RS18300 (BEN31_18300)	-	3614091..3614669 (+)	579	WP_034660143.1	DUF6470 family protein	-
BEN31_RS18305 (BEN31_18305)	fliW	3614698..3615132 (+)	435	WP_034660142.1	flagellar assembly protein FliW	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=192215 BEN31_RS19405 WP_189288297.1 3609579..3610265(+) (comFC) [Bacillus pumilus strain PDSLzg-1]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=192215 BEN31_RS19405 WP_189288297.1 3609579..3610265(+) (comFC) [Bacillus pumilus strain PDSLzg-1]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395