Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BEN31_RS18260 Genome accession   NZ_CP016784
Coordinates   3607843..3609222 (+) Length   459 a.a.
NCBI ID   WP_142393300.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3602843..3614222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS18240 (BEN31_18240) - 3603843..3604511 (-) 669 WP_012011434.1 YigZ family protein -
  BEN31_RS18245 (BEN31_18245) degS 3604733..3605908 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BEN31_RS18250 (BEN31_18250) degU 3605973..3606662 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BEN31_RS18255 (BEN31_18255) - 3606880..3607722 (+) 843 WP_034660152.1 DegV family protein -
  BEN31_RS18260 (BEN31_18260) comFA 3607843..3609222 (+) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  BEN31_RS18265 (BEN31_18265) - 3609289..3609582 (+) 294 WP_060597398.1 late competence development ComFB family protein -
  BEN31_RS19405 (BEN31_18270) comFC 3609579..3610265 (+) 687 WP_189288297.1 ComF family protein Machinery gene
  BEN31_RS18275 (BEN31_18275) - 3610322..3610741 (+) 420 WP_066031681.1 TIGR03826 family flagellar region protein -
  BEN31_RS18280 (BEN31_18280) flgM 3610821..3611084 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BEN31_RS18285 (BEN31_18285) - 3611103..3611585 (+) 483 WP_034660146.1 flagellar protein FlgN -
  BEN31_RS18290 (BEN31_18290) flgK 3611601..3613121 (+) 1521 WP_060597394.1 flagellar hook-associated protein FlgK -
  BEN31_RS18295 (BEN31_18295) flgL 3613131..3614042 (+) 912 WP_066031682.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52604.81 Da        Isoelectric Point: 10.2540

>NTDB_id=192213 BEN31_RS18260 WP_142393300.1 3607843..3609222(+) (comFA) [Bacillus pumilus strain PDSLzg-1]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLVEKGLVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKNKFDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKLAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKITKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=192213 BEN31_RS18260 WP_142393300.1 3607843..3609222(+) (comFA) [Bacillus pumilus strain PDSLzg-1]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGTGGAGAAAGGGTTAGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGGGCGTCAGAAAAATTGATCGAAGCGATAAAAA
ACAAATTTGATCTACTCATTTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATTGAATATGCCTTA
CATCAAGGAATGAGCGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACTTGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGATAACGAAGGTCCTTAGAGA
ACACCGCTTAAATGTGGAGGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTTACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534

Multiple sequence alignment