Detailed information NTG0192211

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: BEN31_RS18245
• Genome accession: NZ_CP016784
• Coordinates: 3604733..3605908 (+)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain PDSLzg-1
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3599733..3610908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN31_RS18225 (BEN31_18225)	tuaH	3600333..3601529 (+)	1197	WP_066031804.1	teichuronic acid biosynthesis protein TuaH	-
BEN31_RS18230 (BEN31_18230)	-	3601664..3602731 (+)	1068	WP_034660156.1	glycosyltransferase family 4 protein	-
BEN31_RS18235 (BEN31_18235)	-	3602767..3603858 (-)	1092	WP_066031680.1	LCP family protein	-
BEN31_RS18240 (BEN31_18240)	-	3603843..3604511 (-)	669	WP_012011434.1	YigZ family protein	-
BEN31_RS18245 (BEN31_18245)	degS	3604733..3605908 (+)	1176	WP_003213166.1	sensor histidine kinase	Regulator
BEN31_RS18250 (BEN31_18250)	degU	3605973..3606662 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
BEN31_RS18255 (BEN31_18255)	-	3606880..3607722 (+)	843	WP_034660152.1	DegV family protein	-
BEN31_RS18260 (BEN31_18260)	comFA	3607843..3609222 (+)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
BEN31_RS18265 (BEN31_18265)	-	3609289..3609582 (+)	294	WP_060597398.1	late competence development ComFB family protein	-
BEN31_RS19405 (BEN31_18270)	comFC	3609579..3610265 (+)	687	WP_189288297.1	ComF family protein	Machinery gene
BEN31_RS18275 (BEN31_18275)	-	3610322..3610741 (+)	420	WP_066031681.1	TIGR03826 family flagellar region protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=192211 BEN31_RS18245 WP_003213166.1 3604733..3605908(+) (degS) [Bacillus pumilus strain PDSLzg-1]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=192211 BEN31_RS18245 WP_003213166.1 3604733..3605908(+) (degS) [Bacillus pumilus strain PDSLzg-1]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTACAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841