Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BEN31_RS18250 Genome accession   NZ_CP016784
Coordinates   3605973..3606662 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain PDSLzg-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3600973..3611662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS18230 (BEN31_18230) - 3601664..3602731 (+) 1068 WP_034660156.1 glycosyltransferase family 4 protein -
  BEN31_RS18235 (BEN31_18235) - 3602767..3603858 (-) 1092 WP_066031680.1 LCP family protein -
  BEN31_RS18240 (BEN31_18240) - 3603843..3604511 (-) 669 WP_012011434.1 YigZ family protein -
  BEN31_RS18245 (BEN31_18245) degS 3604733..3605908 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BEN31_RS18250 (BEN31_18250) degU 3605973..3606662 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BEN31_RS18255 (BEN31_18255) - 3606880..3607722 (+) 843 WP_034660152.1 DegV family protein -
  BEN31_RS18260 (BEN31_18260) comFA 3607843..3609222 (+) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  BEN31_RS18265 (BEN31_18265) - 3609289..3609582 (+) 294 WP_060597398.1 late competence development ComFB family protein -
  BEN31_RS19405 (BEN31_18270) comFC 3609579..3610265 (+) 687 WP_189288297.1 ComF family protein Machinery gene
  BEN31_RS18275 (BEN31_18275) - 3610322..3610741 (+) 420 WP_066031681.1 TIGR03826 family flagellar region protein -
  BEN31_RS18280 (BEN31_18280) flgM 3610821..3611084 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BEN31_RS18285 (BEN31_18285) - 3611103..3611585 (+) 483 WP_034660146.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=192212 BEN31_RS18250 WP_008348273.1 3605973..3606662(+) (degU) [Bacillus pumilus strain PDSLzg-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=192212 BEN31_RS18250 WP_008348273.1 3605973..3606662(+) (degU) [Bacillus pumilus strain PDSLzg-1]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment