Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BA953_RS08710 Genome accession   NZ_CP016556
Coordinates   1932529..1933644 (-) Length   371 a.a.
NCBI ID   WP_065740913.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1927529..1938644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS08680 (BA953_08680) hemF 1928081..1928998 (-) 918 WP_065740911.1 oxygen-dependent coproporphyrinogen oxidase -
  BA953_RS08685 (BA953_08685) - 1929020..1929577 (-) 558 WP_006957520.1 L-threonylcarbamoyladenylate synthase -
  BA953_RS08690 (BA953_08690) purE 1929774..1930259 (+) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BA953_RS08695 (BA953_08695) - 1930264..1931397 (+) 1134 WP_065740912.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BA953_RS08700 (BA953_08700) - 1931447..1932031 (-) 585 WP_021458648.1 type I DNA topoisomerase -
  BA953_RS08705 (BA953_08705) - 1932047..1932526 (-) 480 WP_006957516.1 DUF494 family protein -
  BA953_RS08710 (BA953_08710) dprA 1932529..1933644 (-) 1116 WP_065740913.1 DNA-processing protein DprA Machinery gene
  BA953_RS08715 (BA953_08715) def 1933895..1934416 (+) 522 WP_006957514.1 peptide deformylase -
  BA953_RS08720 (BA953_08720) fmt 1934439..1935386 (+) 948 WP_065740914.1 methionyl-tRNA formyltransferase -
  BA953_RS08725 (BA953_08725) rsmB 1935443..1936723 (+) 1281 WP_065740915.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BA953_RS08730 (BA953_08730) trkA 1936773..1938149 (+) 1377 WP_006957511.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40437.20 Da        Isoelectric Point: 6.4120

>NTDB_id=189154 BA953_RS08710 WP_065740913.1 1932529..1933644(-) (dprA) [Vibrio coralliilyticus strain 58]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPVNIIDSSPETLRRLGFSDSQLNYLQHRAAEDIEACFEWQAESSARTIL
PLSDQRYPALLKQADAAPAILFVEGQLESLSRPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSVYPARHKKLAQRIVEQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPLVQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=189154 BA953_RS08710 WP_065740913.1 1932529..1933644(-) (dprA) [Vibrio coralliilyticus strain 58]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGGCCCAAAACGTTTCAGCGTCTGGT
AGCGGTAGACTCTCCAGTTAACATCATTGACTCTTCACCCGAGACATTACGCCGTTTAGGCTTTTCCGACTCGCAACTGA
ATTATCTCCAACACCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CCTTTGAGTGATCAGCGTTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAATACTGTTTGTTGAAGGTCAGCT
AGAGAGTCTATCTCGGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACCGCACGCAGCT
TTGCAACCCAGTTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCTCATGATGGG
GCACTCAATGGTAATGGCCAAACCATCGCCGTGCTCGGTTGTGGCTTAAATTCTGTGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTGAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATCACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCTAGTGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.215

98.922

0.625
  dprA Vibrio cholerae strain A1552

57.682

100

0.577
  dprA Glaesserella parasuis strain SC1401

45.745

100

0.464
  dprA Legionella pneumophila strain ERS1305867

44.29

96.765

0.429
  dprA Neisseria meningitidis MC58

38.035

100

0.407
  dprA Neisseria meningitidis strain C311

38.035

100

0.407
  dprA Haemophilus influenzae Rd KW20

41.108

92.453

0.38
  dprA Acinetobacter baumannii D1279779

40.179

90.566

0.364
  dprA Acinetobacter baumannii strain A118

39.881

90.566

0.361

Multiple sequence alignment