Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VSVS05_RS01035 | Genome accession | NZ_CP016414 |
| Coordinates | 197018..197476 (-) | Length | 152 a.a. |
| NCBI ID | WP_065430953.1 | Uniprot ID | A0A1B1NRX3 |
| Organism | Vibrio scophthalmi strain VS-05 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 192018..202476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS05_RS01015 (VSVS05_00207) | coaE | 192471..193079 (-) | 609 | WP_065430956.1 | dephospho-CoA kinase | - |
| VSVS05_RS01020 (VSVS05_00208) | pilD | 193084..193953 (-) | 870 | WP_065545000.1 | prepilin peptidase | Machinery gene |
| VSVS05_RS01025 (VSVS05_00209) | pilC | 194059..195282 (-) | 1224 | WP_065545001.1 | type II secretion system F family protein | Machinery gene |
| VSVS05_RS01030 (VSVS05_00210) | pilB | 195336..197018 (-) | 1683 | WP_065545002.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VSVS05_RS01035 (VSVS05_00211) | pilA | 197018..197476 (-) | 459 | WP_065430953.1 | pilin | Machinery gene |
| VSVS05_RS01040 (VSVS05_00212) | mutS | 197739..200306 (-) | 2568 | WP_065545003.1 | DNA mismatch repair protein MutS | - |
| VSVS05_RS01045 (VSVS05_00213) | pncC | 200391..200879 (+) | 489 | WP_005593984.1 | nicotinamide-nucleotide amidase | - |
| VSVS05_RS01050 (VSVS05_00214) | recA | 201094..202134 (+) | 1041 | WP_005593985.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15721.86 Da Isoelectric Point: 4.6853
>NTDB_id=188141 VSVS05_RS01035 WP_065430953.1 197018..197476(-) (pilA) [Vibrio scophthalmi strain VS-05]
MNNTLTRSQRGFTLIELMVVMAIVAILAVFAVPAYQDYTKKATMAEFPTIAAPVKLAVEMCALEKASSTSTFATNCSTSA
GHVPSAAINNISVTATNVSGAIQVIAQATSDKGPVKSGEEFILSATYSDQGITWAASCTDAGGNAQSAYCPD
MNNTLTRSQRGFTLIELMVVMAIVAILAVFAVPAYQDYTKKATMAEFPTIAAPVKLAVEMCALEKASSTSTFATNCSTSA
GHVPSAAINNISVTATNVSGAIQVIAQATSDKGPVKSGEEFILSATYSDQGITWAASCTDAGGNAQSAYCPD
Nucleotide
Download Length: 459 bp
>NTDB_id=188141 VSVS05_RS01035 WP_065430953.1 197018..197476(-) (pilA) [Vibrio scophthalmi strain VS-05]
ATGAACAATACGTTAACTCGCTCTCAACGCGGTTTCACTCTTATTGAATTAATGGTCGTCATGGCGATTGTCGCTATATT
GGCGGTGTTCGCGGTTCCTGCCTATCAAGACTACACCAAGAAAGCGACCATGGCGGAGTTTCCTACCATCGCCGCCCCAG
TAAAGCTAGCCGTTGAAATGTGCGCACTGGAAAAAGCCTCAAGTACCAGCACGTTTGCCACTAACTGCAGCACTAGTGCA
GGACATGTACCAAGCGCGGCAATCAACAACATCAGTGTTACCGCGACGAATGTCTCTGGCGCAATACAAGTGATCGCTCA
AGCAACAAGCGATAAAGGCCCGGTGAAATCTGGGGAAGAGTTCATTCTCAGCGCGACGTACAGCGATCAGGGCATTACTT
GGGCGGCCAGTTGTACAGACGCCGGTGGCAATGCACAAAGCGCCTACTGTCCAGATTAA
ATGAACAATACGTTAACTCGCTCTCAACGCGGTTTCACTCTTATTGAATTAATGGTCGTCATGGCGATTGTCGCTATATT
GGCGGTGTTCGCGGTTCCTGCCTATCAAGACTACACCAAGAAAGCGACCATGGCGGAGTTTCCTACCATCGCCGCCCCAG
TAAAGCTAGCCGTTGAAATGTGCGCACTGGAAAAAGCCTCAAGTACCAGCACGTTTGCCACTAACTGCAGCACTAGTGCA
GGACATGTACCAAGCGCGGCAATCAACAACATCAGTGTTACCGCGACGAATGTCTCTGGCGCAATACAAGTGATCGCTCA
AGCAACAAGCGATAAAGGCCCGGTGAAATCTGGGGAAGAGTTCATTCTCAGCGCGACGTACAGCGATCAGGGCATTACTT
GGGCGGCCAGTTGTACAGACGCCGGTGGCAATGCACAAAGCGCCTACTGTCCAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
52.597 |
100 |
0.533 |
| pilA | Haemophilus influenzae Rd KW20 |
38.095 |
96.711 |
0.368 |
| pilA | Haemophilus influenzae 86-028NP |
38.732 |
93.421 |
0.362 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.194 |
94.737 |
0.362 |