Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | VSVS05_RS01025 | Genome accession | NZ_CP016414 |
| Coordinates | 194059..195282 (-) | Length | 407 a.a. |
| NCBI ID | WP_065545001.1 | Uniprot ID | A0A1C7F7I6 |
| Organism | Vibrio scophthalmi strain VS-05 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 189059..200282
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS05_RS00985 (VSVS05_00201) | rpsP | 189207..189455 (+) | 249 | WP_005593968.1 | 30S ribosomal protein S16 | - |
| VSVS05_RS00990 (VSVS05_00202) | rimM | 189480..190034 (+) | 555 | WP_005593970.1 | ribosome maturation factor RimM | - |
| VSVS05_RS00995 (VSVS05_00203) | trmD | 190062..190811 (+) | 750 | WP_005593971.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| VSVS05_RS01000 (VSVS05_00204) | rplS | 190861..191214 (+) | 354 | WP_005593972.1 | 50S ribosomal protein L19 | - |
| VSVS05_RS01005 (VSVS05_00205) | yacG | 191426..191620 (-) | 195 | WP_005593974.1 | DNA gyrase inhibitor YacG | - |
| VSVS05_RS01010 (VSVS05_00206) | zapD | 191696..192436 (-) | 741 | WP_005593976.1 | cell division protein ZapD | - |
| VSVS05_RS01015 (VSVS05_00207) | coaE | 192471..193079 (-) | 609 | WP_065430956.1 | dephospho-CoA kinase | - |
| VSVS05_RS01020 (VSVS05_00208) | pilD | 193084..193953 (-) | 870 | WP_065545000.1 | prepilin peptidase | Machinery gene |
| VSVS05_RS01025 (VSVS05_00209) | pilC | 194059..195282 (-) | 1224 | WP_065545001.1 | type II secretion system F family protein | Machinery gene |
| VSVS05_RS01030 (VSVS05_00210) | pilB | 195336..197018 (-) | 1683 | WP_065545002.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VSVS05_RS01035 (VSVS05_00211) | pilA | 197018..197476 (-) | 459 | WP_065430953.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 45517.72 Da Isoelectric Point: 10.2692
>NTDB_id=188139 VSVS05_RS01025 WP_065545001.1 194059..195282(-) (pilC) [Vibrio scophthalmi strain VS-05]
MNKKSQQRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG
MNKKSQQRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG
Nucleotide
Download Length: 1224 bp
>NTDB_id=188139 VSVS05_RS01025 WP_065545001.1 194059..195282(-) (pilC) [Vibrio scophthalmi strain VS-05]
ATGAATAAAAAATCACAGCAGCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAGGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCCGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTGATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATAATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTAGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA
ATGAATAAAAAATCACAGCAGCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAGGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCCGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTGATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATAATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTAGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
57.75 |
98.28 |
0.568 |
| pilC | Vibrio campbellii strain DS40M4 |
57.357 |
98.526 |
0.565 |
| pilC | Acinetobacter baylyi ADP1 |
38.235 |
100 |
0.383 |
| pilC | Acinetobacter baumannii D1279779 |
37.5 |
100 |
0.376 |