Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | vm_RS02865 | Genome accession | NZ_CP016383 |
| Coordinates | 559209..559658 (-) | Length | 149 a.a. |
| NCBI ID | WP_070381371.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain SCCF01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 554209..564658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vm_RS02845 (VM_02845) | coaE | 554709..555317 (-) | 609 | WP_070381367.1 | dephospho-CoA kinase | - |
| vm_RS02850 (VM_02850) | pilD | 555314..556189 (-) | 876 | WP_070381368.1 | prepilin peptidase | Machinery gene |
| vm_RS02855 (VM_02855) | pilC | 556252..557478 (-) | 1227 | WP_070381369.1 | type II secretion system F family protein | Machinery gene |
| vm_RS02860 (VM_02860) | pilB | 557517..559205 (-) | 1689 | WP_070381370.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| vm_RS02865 (VM_02865) | pilA | 559209..559658 (-) | 450 | WP_070381371.1 | pilin | Machinery gene |
| vm_RS02870 (VM_02870) | nadC | 559903..560793 (-) | 891 | WP_070382548.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| vm_RS02875 (VM_02875) | ampD | 560958..561506 (+) | 549 | WP_070381372.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| vm_RS02880 (VM_02880) | fldB | 561564..562082 (-) | 519 | WP_000690114.1 | flavodoxin FldB | - |
| vm_RS02885 (VM_02885) | xerD | 562250..563128 (+) | 879 | WP_196770036.1 | site-specific tyrosine recombinase XerD | - |
| vm_RS02890 (VM_02890) | dsbC | 563145..563897 (+) | 753 | WP_061051575.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15919.36 Da Isoelectric Point: 9.4111
>NTDB_id=187679 vm_RS02865 WP_070381371.1 559209..559658(-) (pilA) [Vibrio mimicus strain SCCF01]
MKAYKNKLQKGFTLIELMIVVAVIGVLAAIAVPQYQNYVAKSELGAGLASVTSVRTNVENYVVTNGAFPDGTTNDQKPED
LGVVQPGNADITFVKNKEQILLTFKTAGNSPDINTAKLALVRVNGSWSCKTTVTKKDLLPKSCTTDASI
MKAYKNKLQKGFTLIELMIVVAVIGVLAAIAVPQYQNYVAKSELGAGLASVTSVRTNVENYVVTNGAFPDGTTNDQKPED
LGVVQPGNADITFVKNKEQILLTFKTAGNSPDINTAKLALVRVNGSWSCKTTVTKKDLLPKSCTTDASI
Nucleotide
Download Length: 450 bp
>NTDB_id=187679 vm_RS02865 WP_070381371.1 559209..559658(-) (pilA) [Vibrio mimicus strain SCCF01]
ATGAAAGCGTATAAAAACAAACTGCAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTAATTGGTGTATT
GGCAGCAATTGCTGTACCGCAATATCAGAACTATGTTGCGAAATCAGAGTTAGGCGCAGGTTTAGCGAGCGTTACATCAG
TAAGAACAAATGTAGAAAACTATGTTGTCACCAATGGAGCTTTCCCTGATGGCACAACAAATGACCAAAAACCAGAAGAT
CTTGGTGTCGTACAACCTGGAAATGCGGACATCACTTTTGTTAAAAATAAAGAACAGATTCTGCTGACATTCAAAACTGC
AGGAAATAGCCCTGACATCAATACCGCTAAATTAGCTCTAGTTAGAGTTAATGGTAGTTGGTCCTGTAAAACCACTGTCA
CCAAAAAAGATCTTCTACCGAAATCCTGTACTACTGACGCCAGCATCTAA
ATGAAAGCGTATAAAAACAAACTGCAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTAATTGGTGTATT
GGCAGCAATTGCTGTACCGCAATATCAGAACTATGTTGCGAAATCAGAGTTAGGCGCAGGTTTAGCGAGCGTTACATCAG
TAAGAACAAATGTAGAAAACTATGTTGTCACCAATGGAGCTTTCCCTGATGGCACAACAAATGACCAAAAACCAGAAGAT
CTTGGTGTCGTACAACCTGGAAATGCGGACATCACTTTTGTTAAAAATAAAGAACAGATTCTGCTGACATTCAAAACTGC
AGGAAATAGCCCTGACATCAATACCGCTAAATTAGCTCTAGTTAGAGTTAATGGTAGTTGGTCCTGTAAAACCACTGTCA
CCAAAAAAGATCTTCTACCGAAATCCTGTACTACTGACGCCAGCATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.98 |
100 |
0.523 |
| pilA | Vibrio cholerae strain A1552 |
50.98 |
100 |
0.523 |
| pilA | Vibrio cholerae C6706 |
50.98 |
100 |
0.523 |
| pilA | Pseudomonas aeruginosa PAK |
42.857 |
100 |
0.443 |
| pilA | Acinetobacter baumannii strain A118 |
42.759 |
97.315 |
0.416 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.146 |
91.946 |
0.369 |