Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | vm_RS02855 | Genome accession | NZ_CP016383 |
| Coordinates | 556252..557478 (-) | Length | 408 a.a. |
| NCBI ID | WP_070381369.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain SCCF01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 551252..562478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vm_RS02835 (VM_02835) | yacG | 553489..553686 (-) | 198 | WP_000162865.1 | DNA gyrase inhibitor YacG | - |
| vm_RS02840 (VM_02840) | zapD | 553937..554677 (-) | 741 | WP_070381366.1 | cell division protein ZapD | - |
| vm_RS02845 (VM_02845) | coaE | 554709..555317 (-) | 609 | WP_070381367.1 | dephospho-CoA kinase | - |
| vm_RS02850 (VM_02850) | pilD | 555314..556189 (-) | 876 | WP_070381368.1 | prepilin peptidase | Machinery gene |
| vm_RS02855 (VM_02855) | pilC | 556252..557478 (-) | 1227 | WP_070381369.1 | type II secretion system F family protein | Machinery gene |
| vm_RS02860 (VM_02860) | pilB | 557517..559205 (-) | 1689 | WP_070381370.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| vm_RS02865 (VM_02865) | pilA | 559209..559658 (-) | 450 | WP_070381371.1 | pilin | Machinery gene |
| vm_RS02870 (VM_02870) | nadC | 559903..560793 (-) | 891 | WP_070382548.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| vm_RS02875 (VM_02875) | ampD | 560958..561506 (+) | 549 | WP_070381372.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| vm_RS02880 (VM_02880) | fldB | 561564..562082 (-) | 519 | WP_000690114.1 | flavodoxin FldB | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 45157.45 Da Isoelectric Point: 10.3424
>NTDB_id=187677 vm_RS02855 WP_070381369.1 556252..557478(-) (pilC) [Vibrio mimicus strain SCCF01]
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASTHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFAAIVAMVFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASTHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFAAIVAMVFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG
Nucleotide
Download Length: 1227 bp
>NTDB_id=187677 vm_RS02855 WP_070381369.1 556252..557478(-) (pilC) [Vibrio mimicus strain SCCF01]
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATTGTGCAAGCGCTCAAACTGGTGGGAGATAACCATAGAAAGGCGGAGATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCACCCATTTCGATACTT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACCTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTATCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGCTTTGGGGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCATACAGTCTATGGGCATTTGCGGCCATCGTAGCCATGGTATTTGGA
CTAAAAGCACTGCGTAAGAATTCCTTTCAAATTCGATTAAAAACCAGTCGGTTAGGGCTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCCAAATTCAGCCGGACTCTCGCCACCAGCTTTGCGGCGGGTATTCCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCTGGCAATGTGCACTTTGAAACTGCAATCAACGAAGTATACCGTGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCAGAGATGGTGCTGCAAATGGTGATGATAGGTGAAGA
ATCAGGCCAATTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTACCTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACTCGACAATTGGCCACCATG
CTCACTACTGGTGTACCCATTGTGCAAGCGCTCAAACTGGTGGGAGATAACCATAGAAAGGCGGAGATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCACCCATTTCGATACTT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACCTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTATCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACCATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGCTTTGGGGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCGCACTGGGTTCAGGCATACAGTCTATGGGCATTTGCGGCCATCGTAGCCATGGTATTTGGA
CTAAAAGCACTGCGTAAGAATTCCTTTCAAATTCGATTAAAAACCAGTCGGTTAGGGCTGAAATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCCAAATTCAGCCGGACTCTCGCCACCAGCTTTGCGGCGGGTATTCCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCTGGCAATGTGCACTTTGAAACTGCAATCAACGAAGTATACCGTGATACTGCCGCG
GGTATGCCCATGTATATTGCGATGCGCAATACCGAAGCCTTTCCAGAGATGGTGCTGCAAATGGTGATGATAGGTGAAGA
ATCAGGCCAATTGGATGACATGCTCAACAAGGTCGCCACCATCTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTACTGTTGTGGGTGGCTTGGTCGTGGCTATGTACCTGCCTATC
TTTAACTTAATGAGTGTATTGGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
95.588 |
100 |
0.956 |
| pilC | Vibrio campbellii strain DS40M4 |
74.5 |
98.039 |
0.73 |
| pilC | Pseudomonas stutzeri DSM 10701 |
42.289 |
98.529 |
0.417 |
| pilC | Acinetobacter baumannii D1279779 |
42 |
98.039 |
0.412 |
| pilC | Acinetobacter baylyi ADP1 |
41.176 |
100 |
0.412 |
| pilC | Legionella pneumophila strain ERS1305867 |
42.065 |
97.304 |
0.409 |
| pilG | Neisseria gonorrhoeae MS11 |
41.103 |
97.794 |
0.402 |
| pilG | Neisseria meningitidis 44/76-A |
40.602 |
97.794 |
0.397 |