Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BA890_RS11955 | Genome accession | NZ_CP016345 |
| Coordinates | 2642737..2643195 (+) | Length | 152 a.a. |
| NCBI ID | WP_020333947.1 | Uniprot ID | A0AAN0Y3X9 |
| Organism | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2637737..2648195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA890_RS11940 (BA890_11940) | pdhR | 2639768..2640535 (-) | 768 | WP_014232947.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BA890_RS11945 (BA890_11945) | ampD | 2640945..2641490 (-) | 546 | WP_020333945.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BA890_RS11950 (BA890_11950) | nadC | 2641583..2642470 (+) | 888 | WP_020333946.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BA890_RS11955 (BA890_11955) | pilA | 2642737..2643195 (+) | 459 | WP_020333947.1 | pilin | Machinery gene |
| BA890_RS11960 (BA890_11960) | pilB | 2643196..2644881 (+) | 1686 | WP_020333948.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA890_RS11965 (BA890_11965) | pilC | 2644912..2646135 (+) | 1224 | WP_020333949.1 | type II secretion system F family protein | Machinery gene |
| BA890_RS11970 (BA890_11970) | pilD | 2646203..2647072 (+) | 870 | WP_020333950.1 | prepilin peptidase | Machinery gene |
| BA890_RS11975 (BA890_11975) | coaE | 2647073..2647687 (+) | 615 | WP_020333951.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15920.27 Da Isoelectric Point: 7.7804
>NTDB_id=187121 BA890_RS11955 WP_020333947.1 2642737..2643195(+) (pilA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGVGLANITALKTNIEDYIATEGSFPSTTSGTKADFT
RLGTVEDMGDGNVLITPTSDGSLDGTVKFTFDAGVVNTQKIQLVRSGGLWICETTAASEISPKGCAAGSTIK
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGVGLANITALKTNIEDYIATEGSFPSTTSGTKADFT
RLGTVEDMGDGNVLITPTSDGSLDGTVKFTFDAGVVNTQKIQLVRSGGLWICETTAASEISPKGCAAGSTIK
Nucleotide
Download Length: 459 bp
>NTDB_id=187121 BA890_RS11955 WP_020333947.1 2642737..2643195(+) (pilA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATCGTGGTGGCGGTAATAGGGGTTTT
GGCAGCAATTGCTATCCCTCAGTACCAAAACTACGTAAAGAAATCAGCTTTAGGAGTAGGCCTAGCAAATATTACTGCTC
TGAAAACTAACATCGAGGATTATATTGCTACTGAAGGTAGCTTTCCTTCAACAACATCAGGTACCAAAGCTGATTTTACG
CGGCTCGGTACCGTAGAAGACATGGGAGATGGCAACGTTCTAATCACCCCTACAAGCGACGGCTCTTTAGATGGAACAGT
AAAATTCACCTTTGATGCAGGTGTCGTCAATACACAAAAGATTCAGTTAGTTCGATCTGGTGGACTTTGGATATGTGAAA
CGACAGCAGCAAGTGAAATATCTCCAAAAGGTTGTGCTGCTGGTTCAACGATTAAATAA
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATCGTGGTGGCGGTAATAGGGGTTTT
GGCAGCAATTGCTATCCCTCAGTACCAAAACTACGTAAAGAAATCAGCTTTAGGAGTAGGCCTAGCAAATATTACTGCTC
TGAAAACTAACATCGAGGATTATATTGCTACTGAAGGTAGCTTTCCTTCAACAACATCAGGTACCAAAGCTGATTTTACG
CGGCTCGGTACCGTAGAAGACATGGGAGATGGCAACGTTCTAATCACCCCTACAAGCGACGGCTCTTTAGATGGAACAGT
AAAATTCACCTTTGATGCAGGTGTCGTCAATACACAAAAGATTCAGTTAGTTCGATCTGGTGGACTTTGGATATGTGAAA
CGACAGCAGCAAGTGAAATATCTCCAAAAGGTTGTGCTGCTGGTTCAACGATTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
77.632 |
100 |
0.776 |
| pilA | Vibrio cholerae C6706 |
77.632 |
100 |
0.776 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
77.632 |
100 |
0.776 |
| pilA | Pseudomonas aeruginosa PAK |
43.226 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.568 |
97.368 |
0.414 |
| pilA | Acinetobacter baumannii strain A118 |
40.397 |
99.342 |
0.401 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
94.079 |
0.375 |