Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BA890_RS11970 | Genome accession | NZ_CP016345 |
| Coordinates | 2646203..2647072 (+) | Length | 289 a.a. |
| NCBI ID | WP_020333950.1 | Uniprot ID | A0AAN1CWE3 |
| Organism | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2641203..2652072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA890_RS11950 (BA890_11950) | nadC | 2641583..2642470 (+) | 888 | WP_020333946.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BA890_RS11955 (BA890_11955) | pilA | 2642737..2643195 (+) | 459 | WP_020333947.1 | pilin | Machinery gene |
| BA890_RS11960 (BA890_11960) | pilB | 2643196..2644881 (+) | 1686 | WP_020333948.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BA890_RS11965 (BA890_11965) | pilC | 2644912..2646135 (+) | 1224 | WP_020333949.1 | type II secretion system F family protein | Machinery gene |
| BA890_RS11970 (BA890_11970) | pilD | 2646203..2647072 (+) | 870 | WP_020333950.1 | prepilin peptidase | Machinery gene |
| BA890_RS11975 (BA890_11975) | coaE | 2647073..2647687 (+) | 615 | WP_020333951.1 | dephospho-CoA kinase | - |
| BA890_RS11980 (BA890_11980) | zapD | 2647714..2648454 (+) | 741 | WP_020333952.1 | cell division protein ZapD | - |
| BA890_RS11985 (BA890_11985) | yacG | 2648528..2648722 (+) | 195 | WP_014232956.1 | DNA gyrase inhibitor YacG | - |
| BA890_RS11990 (BA890_11990) | rplS | 2649047..2649400 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| BA890_RS11995 (BA890_11995) | trmD | 2649441..2650202 (-) | 762 | WP_014232957.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BA890_RS12000 (BA890_12000) | rimM | 2650230..2650778 (-) | 549 | WP_014232958.1 | ribosome maturation factor RimM | - |
| BA890_RS12005 (BA890_12005) | rpsP | 2650809..2651057 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32310.38 Da Isoelectric Point: 6.4408
>NTDB_id=187124 BA890_RS11970 WP_020333950.1 2646203..2647072(+) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
Nucleotide
Download Length: 870 bp
>NTDB_id=187124 BA890_RS11970 WP_020333950.1 2646203..2647072(+) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.194 |
99.654 |
0.879 |
| pilD | Vibrio cholerae strain A1552 |
72.569 |
99.654 |
0.723 |
| pilD | Acinetobacter baumannii D1279779 |
53.069 |
95.848 |
0.509 |
| pilD | Acinetobacter nosocomialis M2 |
52.708 |
95.848 |
0.505 |
| pilD | Neisseria gonorrhoeae MS11 |
46.739 |
95.502 |
0.446 |