Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VSVS12_RS01280 Genome accession   NZ_CP016307
Coordinates   274445..275587 (+) Length   380 a.a.
NCBI ID   WP_065429622.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain VS-12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 269445..280587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS12_RS01260 (VSVS12_00251) rsmB 270440..271720 (-) 1281 WP_065429619.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VSVS12_RS01265 (VSVS12_00252) fmt 271860..272807 (-) 948 WP_065429620.1 methionyl-tRNA formyltransferase -
  VSVS12_RS01270 (VSVS12_00253) def 272826..273335 (-) 510 WP_005597353.1 peptide deformylase -
  VSVS12_RS01275 (VSVS12_00254) - 273506..274441 (+) 936 WP_065429621.1 peptidoglycan-binding protein LysM -
  VSVS12_RS01280 (VSVS12_00255) dprA 274445..275587 (+) 1143 WP_065429622.1 DNA-processing protein DprA Machinery gene
  VSVS12_RS01285 (VSVS12_00256) - 275584..276060 (+) 477 WP_005597359.1 DUF494 family protein -
  VSVS12_RS01290 (VSVS12_00257) - 276182..276760 (+) 579 WP_005597361.1 type I DNA topoisomerase -
  VSVS12_RS01295 (VSVS12_00258) - 276815..277956 (-) 1142 Protein_230 5-(carboxyamino)imidazole ribonucleotide synthase -
  VSVS12_RS01300 (VSVS12_00260) purE 277960..278445 (-) 486 WP_005597378.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VSVS12_RS01305 (VSVS12_00261) - 278641..279198 (+) 558 WP_009386325.1 L-threonylcarbamoyladenylate synthase -
  VSVS12_RS01310 (VSVS12_00262) hemF 279260..280180 (+) 921 WP_009386326.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 41242.74 Da        Isoelectric Point: 8.4849

>NTDB_id=186745 VSVS12_RS01280 WP_065429622.1 274445..275587(+) (dprA) [Vibrio scophthalmi strain VS-12]
MIVESNDLSHLDLIAWLTLYFTPRLGPKGMSKLLSKASATQLVTYDSPQLLALGLTEAQVRSIQQPNQLYLMQCLEWLHA
STEHHIITLQSESYPPLLKQISAPPAVLFVKGDLNALHQPQIALVGSRHASIDGLNNAKHFAAALVQHGLVVTSGLALGI
DGYAHDGALTAKGKTIAVLGCGLEHVYPARHRKLAARVVQNGALVSEFHPRTLPKASNFPRRNRIISGLSLGVLVVEAAE
KSGSLITARYAAEQGRDVFAIPGSIQVPQARGCNSLIQQGACLVQSEQDVLNEIDTLLRWSNINKPLMQIEHSLEKEQKE
QLPFAKLLANVGAEVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=186745 VSVS12_RS01280 WP_065429622.1 274445..275587(+) (dprA) [Vibrio scophthalmi strain VS-12]
ATGATTGTAGAGAGTAATGATTTATCGCATCTCGACCTTATCGCGTGGCTGACGCTTTACTTCACCCCAAGGCTTGGGCC
CAAAGGGATGAGTAAGCTACTTAGCAAGGCATCTGCAACGCAGTTAGTCACTTATGATTCGCCGCAACTTTTGGCGCTCG
GCTTAACTGAAGCGCAAGTGAGGTCAATTCAACAGCCGAATCAGCTTTATTTAATGCAATGTTTAGAGTGGCTGCATGCA
TCGACAGAGCACCATATTATCACGTTGCAGTCGGAGTCTTATCCGCCGCTATTGAAACAGATTTCTGCACCGCCGGCAGT
ATTGTTTGTTAAAGGTGATTTGAATGCATTACATCAGCCACAAATTGCCTTGGTCGGCAGTCGTCATGCCTCGATTGATG
GTTTAAACAACGCCAAACACTTCGCTGCCGCATTGGTTCAGCATGGTTTGGTGGTCACCAGTGGCTTGGCGCTAGGTATT
GATGGTTATGCGCATGATGGGGCTCTAACGGCGAAAGGCAAAACCATCGCAGTACTGGGTTGTGGTCTTGAGCATGTTTA
TCCCGCTCGCCATCGAAAACTCGCAGCACGAGTGGTGCAAAATGGCGCTTTGGTATCGGAGTTTCACCCTCGAACGTTGC
CGAAAGCGAGCAACTTTCCGCGCCGTAATCGCATTATTAGTGGTTTGTCGCTGGGTGTATTGGTTGTGGAAGCGGCGGAA
AAAAGCGGTTCTCTGATCACCGCGCGCTATGCTGCAGAGCAAGGTCGAGACGTTTTTGCTATTCCTGGCTCTATTCAAGT
GCCCCAAGCGAGAGGATGTAACAGCCTGATCCAGCAAGGGGCGTGCTTAGTACAAAGTGAACAAGATGTGTTAAATGAAA
TAGATACACTGTTGCGCTGGTCTAATATTAATAAGCCTTTAATGCAAATTGAGCATAGCTTGGAAAAAGAGCAGAAAGAA
CAATTGCCATTTGCCAAGCTGTTAGCTAACGTAGGAGCCGAAGTAACACCTGTTGATATTCTGGCACAAAGGACCAATAT
CCCTGTGCAAGAGGTCATGATGCAGCTCTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTC
GTAAGGGGAGGGGCAAGCTATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-371)

DNA recombination-mediator protein A (DNA_processg_A)

(82-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

66.216

97.368

0.645
  dprA Vibrio cholerae strain A1552

58.583

96.579

0.566
  dprA Glaesserella parasuis strain SC1401

46.032

99.474

0.458
  dprA Legionella pneumophila strain ERS1305867

46.518

94.474

0.439
  dprA Neisseria meningitidis strain C311

38.539

100

0.403
  dprA Neisseria meningitidis MC58

38.539

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.456

100

0.379
  dprA Haemophilus influenzae Rd KW20

49.129

75.526

0.371

Multiple sequence alignment