Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A6E01_RS00225 Genome accession   NZ_CP016177
Coordinates   45839..46969 (+) Length   376 a.a.
NCBI ID   WP_017029764.1    Uniprot ID   -
Organism   Vibrio breoganii strain FF50     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 40839..51969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS00205 (A6E01_00205) trkA 41507..42883 (-) 1377 WP_017029768.1 Trk system potassium transporter TrkA -
  A6E01_RS00210 (A6E01_00210) rsmB 42911..44200 (-) 1290 WP_017029767.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  A6E01_RS00215 (A6E01_00215) fmt 44256..45203 (-) 948 WP_017029766.1 methionyl-tRNA formyltransferase -
  A6E01_RS00220 (A6E01_00220) def 45217..45729 (-) 513 WP_017029765.1 peptide deformylase -
  A6E01_RS00225 (A6E01_00225) dprA 45839..46969 (+) 1131 WP_017029764.1 DNA-processing protein DprA Machinery gene
  A6E01_RS00230 (A6E01_00230) - 46972..47445 (+) 474 WP_017029763.1 DUF494 family protein -
  A6E01_RS00235 (A6E01_00235) - 47453..48007 (+) 555 WP_017029762.1 type I DNA topoisomerase -
  A6E01_RS00240 (A6E01_00240) - 48082..49197 (-) 1116 WP_017029761.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  A6E01_RS00245 (A6E01_00245) purE 49202..49687 (-) 486 WP_017029760.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  A6E01_RS00250 (A6E01_00250) - 49872..50429 (+) 558 WP_017033051.1 L-threonylcarbamoyladenylate synthase -
  A6E01_RS00255 (A6E01_00255) hemF 50433..51338 (+) 906 WP_065209338.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41182.26 Da        Isoelectric Point: 7.0236

>NTDB_id=186070 A6E01_RS00225 WP_017029764.1 45839..46969(+) (dprA) [Vibrio breoganii strain FF50]
MKEQQITAWLTLCMTPRLSGVRLQKILEFLSPQQLLSLSKKELFSLKFTEPQVRFLTATSNQSVDKCLEWANKDGNHLLI
AEDKETYPPLLKEIPSFPPVLFVQGEVTTLCSTQVGIVGSRNSSQDGLYITRQFSSQLTKVGVTITSGLALGVDGHAHQA
CLEQNGKTIAVLGSGFDFLYPKQHKSLAQRIKENGALVSEFPPFYPPRAYNFPRRNRIISGLSVGVLVVEAAQKSGSLIT
ARFALEQGRDVYAVPGSVLNPNAAGCNQLLRDGAVLVRDAQDIVHEINGLVNWSSTIQQEAALSLPPSVEKGEQREQTET
GNQPILDLLGERPVAVDFLAERAHLPVNQVMMQLLELELQGIVASVVGGYIRLRGS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=186070 A6E01_RS00225 WP_017029764.1 45839..46969(+) (dprA) [Vibrio breoganii strain FF50]
ATGAAAGAACAACAGATAACAGCATGGCTTACGCTCTGTATGACGCCTCGTTTAAGTGGAGTTAGGTTGCAGAAAATCCT
TGAGTTTCTTTCCCCTCAACAACTGTTATCTCTGTCAAAAAAGGAGCTGTTTTCTCTTAAGTTTACTGAGCCTCAGGTAC
GGTTTTTAACGGCCACATCCAATCAAAGTGTCGATAAATGCCTAGAGTGGGCAAATAAAGACGGTAACCACTTACTCATA
GCAGAAGACAAAGAAACGTATCCGCCTTTGCTAAAAGAAATCCCCAGCTTTCCTCCGGTACTGTTTGTTCAGGGGGAGGT
GACAACACTGTGCTCGACCCAAGTGGGTATCGTTGGTAGCCGAAATAGCTCTCAAGATGGCCTATACATTACTCGCCAAT
TTTCTTCGCAACTGACCAAAGTTGGCGTGACGATCACCAGTGGTTTAGCTCTGGGAGTGGATGGTCATGCGCATCAGGCC
TGTTTAGAGCAGAACGGAAAAACAATTGCCGTATTAGGGAGTGGCTTTGATTTTTTATACCCCAAGCAACACAAGTCGTT
AGCACAGCGAATCAAAGAGAATGGCGCGCTTGTTTCTGAGTTTCCGCCCTTTTATCCACCGAGAGCGTATAACTTCCCAA
GGCGTAATCGAATCATTAGCGGCTTATCTGTTGGCGTGTTGGTGGTTGAGGCGGCGCAAAAAAGTGGATCTTTAATAACG
GCGCGTTTTGCCCTAGAGCAAGGGCGCGATGTGTACGCAGTTCCGGGTTCGGTGCTCAACCCCAATGCTGCGGGGTGCAA
TCAATTGCTTCGAGATGGAGCGGTTTTAGTGAGAGATGCGCAAGATATTGTTCATGAAATTAATGGCTTAGTTAACTGGT
CTTCTACAATACAACAAGAGGCCGCTTTATCTTTGCCGCCGTCAGTTGAAAAGGGAGAACAAAGAGAGCAAACGGAGACA
GGAAATCAGCCAATACTGGATCTGCTGGGAGAGAGGCCTGTGGCAGTTGATTTTTTAGCAGAAAGGGCCCATTTACCCGT
AAATCAGGTTATGATGCAGTTATTAGAGCTGGAGCTTCAAGGTATAGTGGCTTCAGTCGTTGGTGGTTACATTAGATTAA
GGGGGAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(316-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.864

97.606

0.487
  dprA Vibrio cholerae strain A1552

47.849

98.936

0.473
  dprA Neisseria meningitidis strain C311

39.651

100

0.423
  dprA Neisseria meningitidis MC58

39.651

100

0.423
  dprA Glaesserella parasuis strain SC1401

42.627

99.202

0.423
  dprA Legionella pneumophila strain ERS1305867

41.667

98.936

0.412
  dprA Neisseria gonorrhoeae MS11

38.653

100

0.412
  dprA Neisseria gonorrhoeae strain FA1090

38.653

100

0.412
  dprA Haemophilus influenzae Rd KW20

45.21

88.83

0.402

Multiple sequence alignment