Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A9D66_RS18345 | Genome accession | NZ_CP015972 |
| Coordinates | 4033110..4034363 (+) | Length | 417 a.a. |
| NCBI ID | WP_026006934.1 | Uniprot ID | A0AAX0I5G1 |
| Organism | Xanthomonas citri pv. glycines str. 12-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4028110..4039363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9D66_RS18315 (A9D66_17470) | pilR | 4028173..4029627 (+) | 1455 | WP_016850709.1 | sigma-54 dependent transcriptional regulator | Regulator |
| A9D66_RS18335 (A9D66_17475) | pilB | 4030474..4032210 (-) | 1737 | WP_029828360.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A9D66_RS18340 (A9D66_17480) | pilA/pilAI | 4032345..4032752 (-) | 408 | WP_016849608.1 | pilin | Machinery gene |
| A9D66_RS18345 (A9D66_17485) | pilC | 4033110..4034363 (+) | 1254 | WP_026006934.1 | type II secretion system F family protein | Machinery gene |
| A9D66_RS18350 (A9D66_17490) | - | 4034370..4035233 (+) | 864 | WP_016849610.1 | A24 family peptidase | - |
| A9D66_RS18355 (A9D66_17495) | coaE | 4035247..4035858 (+) | 612 | WP_016849611.1 | dephospho-CoA kinase | - |
| A9D66_RS25405 | - | 4036253..4036519 (+) | 267 | WP_154666337.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 417 a.a. Molecular weight: 45101.21 Da Isoelectric Point: 10.1912
>NTDB_id=184841 A9D66_RS18345 WP_026006934.1 4033110..4034363(+) (pilC) [Xanthomonas citri pv. glycines str. 12-2]
MSTAPSASKNRPAPATQLSPFVWEGKDKRGATMKGEQTARNANLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAKDIA
FFSRQMATMMKSGVPIVGALEIIGEGQKNPRMRTMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVSASRFMVSWWWALL
LLIVGAIGGMIFAYKRSPAMQHSLDRLVLKVPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGSSVYEAAV
LRMRDDVSVGYPVNVAMKQVGLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGG
MVIGMYLPIFKLASVVG
MSTAPSASKNRPAPATQLSPFVWEGKDKRGATMKGEQTARNANLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAKDIA
FFSRQMATMMKSGVPIVGALEIIGEGQKNPRMRTMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVSASRFMVSWWWALL
LLIVGAIGGMIFAYKRSPAMQHSLDRLVLKVPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGSSVYEAAV
LRMRDDVSVGYPVNVAMKQVGLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGG
MVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1254 bp
>NTDB_id=184841 A9D66_RS18345 WP_026006934.1 4033110..4034363(+) (pilC) [Xanthomonas citri pv. glycines str. 12-2]
ATGTCAACAGCACCTAGCGCTTCAAAAAATAGACCAGCACCCGCAACTCAATTGAGCCCGTTTGTCTGGGAGGGGAAAGA
CAAGCGCGGCGCAACAATGAAGGGAGAGCAGACAGCGCGCAACGCCAACCTACTGCGTGCCGAATTACGTAGGCAGGGGA
TCACACCCACTGTGGTGAAACCCAAGCCGAAACCTCTTTTTGGCGCAGCGGGCAAGAAGGTTACCGCCAAAGACATTGCT
TTCTTTAGCCGGCAGATGGCAACGATGATGAAATCTGGCGTGCCAATCGTCGGCGCCTTGGAAATCATCGGCGAAGGACA
AAAAAACCCTCGCATGCGCACGATGGTCGGTCAAGTCCGCACTGACATTGAAGGCGGATCTTCGTTGTACGAGGCGATCA
GCAAGCATCCTGTGCAGTTTGACGAGTTGTACCGGAACTTGGTCCGAGCAGGTGAAGGCGCTGGCGTGCTTGAAACGGTG
CTGGACACCATCGCCAGTTACAAGGAAAACATCGAGGCGCTCAAGGGCAAAATCAAAAAGGCACTATTCTACCCCGCCAT
GGTAATGGCTGTAGCTCTTCTGGTTAGTTCTATCCTTCTGATCTGGGTTGTTCCGCAATTTGAAGACGTTTTCAAAGGAT
TTGGTGCCGAACTCCCCGCTTTCACTCAAATGATCGTCAGCGCGTCGCGCTTCATGGTCTCATGGTGGTGGGCACTGTTA
CTCCTAATCGTCGGAGCGATCGGAGGAATGATATTTGCCTATAAACGCTCTCCGGCGATGCAACACAGCTTGGATCGACT
TGTATTGAAGGTTCCGGTCATTGGGCAGATCATGCATAACAGTTCTGTCGCCAGGTTTGCCCGAACAACAGCAGTTACCT
TTAAGGCAGGTGTCCCTCTGGTAGAGGCACTGAGTATTGTTGCGGGCGCCACTGGGAGCTCGGTCTACGAGGCAGCAGTG
CTTCGTATGCGAGACGATGTTTCGGTCGGATATCCAGTAAACGTAGCGATGAAGCAAGTTGGCCTCTTCCCGCACATGGT
GGTGCAAATGACCGCTATCGGTGAAGAAGCAGGCGCGCTCGACACCATGCTTTTCAAGGTCGCGGAGTACTTCGAGCAGG
AAGTTAACAACGCAGTCGACGCTCTAAGCAGTCTCTTAGAGCCACTGATCATGGTGTTCATTGGTACCATCGTCGGCGGC
ATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA
ATGTCAACAGCACCTAGCGCTTCAAAAAATAGACCAGCACCCGCAACTCAATTGAGCCCGTTTGTCTGGGAGGGGAAAGA
CAAGCGCGGCGCAACAATGAAGGGAGAGCAGACAGCGCGCAACGCCAACCTACTGCGTGCCGAATTACGTAGGCAGGGGA
TCACACCCACTGTGGTGAAACCCAAGCCGAAACCTCTTTTTGGCGCAGCGGGCAAGAAGGTTACCGCCAAAGACATTGCT
TTCTTTAGCCGGCAGATGGCAACGATGATGAAATCTGGCGTGCCAATCGTCGGCGCCTTGGAAATCATCGGCGAAGGACA
AAAAAACCCTCGCATGCGCACGATGGTCGGTCAAGTCCGCACTGACATTGAAGGCGGATCTTCGTTGTACGAGGCGATCA
GCAAGCATCCTGTGCAGTTTGACGAGTTGTACCGGAACTTGGTCCGAGCAGGTGAAGGCGCTGGCGTGCTTGAAACGGTG
CTGGACACCATCGCCAGTTACAAGGAAAACATCGAGGCGCTCAAGGGCAAAATCAAAAAGGCACTATTCTACCCCGCCAT
GGTAATGGCTGTAGCTCTTCTGGTTAGTTCTATCCTTCTGATCTGGGTTGTTCCGCAATTTGAAGACGTTTTCAAAGGAT
TTGGTGCCGAACTCCCCGCTTTCACTCAAATGATCGTCAGCGCGTCGCGCTTCATGGTCTCATGGTGGTGGGCACTGTTA
CTCCTAATCGTCGGAGCGATCGGAGGAATGATATTTGCCTATAAACGCTCTCCGGCGATGCAACACAGCTTGGATCGACT
TGTATTGAAGGTTCCGGTCATTGGGCAGATCATGCATAACAGTTCTGTCGCCAGGTTTGCCCGAACAACAGCAGTTACCT
TTAAGGCAGGTGTCCCTCTGGTAGAGGCACTGAGTATTGTTGCGGGCGCCACTGGGAGCTCGGTCTACGAGGCAGCAGTG
CTTCGTATGCGAGACGATGTTTCGGTCGGATATCCAGTAAACGTAGCGATGAAGCAAGTTGGCCTCTTCCCGCACATGGT
GGTGCAAATGACCGCTATCGGTGAAGAAGCAGGCGCGCTCGACACCATGCTTTTCAAGGTCGCGGAGTACTTCGAGCAGG
AAGTTAACAACGCAGTCGACGCTCTAAGCAGTCTCTTAGAGCCACTGATCATGGTGTTCATTGGTACCATCGTCGGCGGC
ATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.234 |
96.403 |
0.513 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.847 |
99.041 |
0.504 |
| pilC | Acinetobacter baylyi ADP1 |
51.478 |
97.362 |
0.501 |
| pilC | Acinetobacter baumannii D1279779 |
49.132 |
96.643 |
0.475 |
| pilG | Neisseria gonorrhoeae MS11 |
42.25 |
95.923 |
0.405 |
| pilG | Neisseria meningitidis 44/76-A |
41.75 |
95.923 |
0.4 |
| pilC | Vibrio cholerae strain A1552 |
40.887 |
97.362 |
0.398 |
| pilC | Vibrio campbellii strain DS40M4 |
40.099 |
96.882 |
0.388 |
| pilC | Thermus thermophilus HB27 |
39.461 |
97.842 |
0.386 |