Detailed information NTG0183094

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: LLUC06_RS12055
• Genome accession: NZ_CP015902
• Coordinates: 2401313..2401759 (-)
• Length: 148 a.a.
• NCBI ID: WP_058203710.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain UC06
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2396313..2406759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC06_RS12020 (LLUC06_2337)	-	2396431..2396808 (-)	378	WP_081213760.1	pyridoxamine 5'-phosphate oxidase family protein	-
LLUC06_RS12025 (LLUC06_2338)	-	2397013..2397879 (+)	867	WP_058203713.1	RluA family pseudouridine synthase	-
LLUC06_RS12030 (LLUC06_2339)	-	2397917..2398726 (-)	810	WP_014570791.1	metal ABC transporter permease	-
LLUC06_RS12035 (LLUC06_2340)	-	2398719..2399456 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
LLUC06_RS12040 (LLUC06_2341)	-	2399633..2400475 (-)	843	WP_081213761.1	metal ABC transporter substrate-binding protein	-
LLUC06_RS12045 (LLUC06_2342)	-	2400472..2400909 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
LLUC06_RS12050 (LLUC06_2343)	comGG	2400990..2401274 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
LLUC06_RS12055 (LLUC06_2344)	comGF	2401313..2401759 (-)	447	WP_058203710.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLUC06_RS12060 (LLUC06_2345)	comGE	2401722..2402018 (-)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLUC06_RS12065 (LLUC06_2346)	comGD	2401990..2402421 (-)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
LLUC06_RS12070 (LLUC06_2347)	comGC	2402381..2402764 (-)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
LLUC06_RS12075 (LLUC06_2348)	comGB	2402778..2403851 (-)	1074	WP_081213814.1	competence type IV pilus assembly protein ComGB	Machinery gene
LLUC06_RS12080 (LLUC06_2349)	comGA	2403745..2404682 (-)	938	Protein_2349	competence type IV pilus ATPase ComGA	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17181.02 Da
• Isoelectric Point: 9.0871

>NTDB_id=183094 LLUC06_RS12055 WP_058203710.1 2401313..2401759(-) (comGF) [Lactococcus lactis subsp. lactis strain UC06]
MERKLCNLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQDFL
YVTKDKKLRFGFMRDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=183094 LLUC06_RS12055 WP_058203710.1 2401313..2401759(-) (comGF) [Lactococcus lactis subsp. lactis strain UC06]
ATGGAAAGGAAATTATGCAACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAGCAGGATTTTCTG
TATGTAACTAAAGACAAAAAACTAAGGTTTGGTTTTATGAGAGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAGAGAACATTTATTTATCAATTTCCGGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	75.54	93.919	0.709
comYF	Streptococcus mutans UA140	47.518	95.27	0.453
comYF	Streptococcus mutans UA159	46.809	95.27	0.446
comGF/cglF	Streptococcus mitis SK321	41.606	92.568	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385
comGF/cglF	Streptococcus pneumoniae Rx1	39.007	95.27	0.372
comGF/cglF	Streptococcus pneumoniae D39	39.007	95.27	0.372
comGF/cglF	Streptococcus pneumoniae R6	39.007	95.27	0.372
comGF/cglF	Streptococcus pneumoniae TIGR4	39.007	95.27	0.372