Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | LLUC06_RS12060 | Genome accession | NZ_CP015902 |
| Coordinates | 2401722..2402018 (-) | Length | 98 a.a. |
| NCBI ID | WP_033900709.1 | Uniprot ID | A0A0H1RKN4 |
| Organism | Lactococcus lactis subsp. lactis strain UC06 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2396722..2407018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC06_RS12025 (LLUC06_2338) | - | 2397013..2397879 (+) | 867 | WP_058203713.1 | RluA family pseudouridine synthase | - |
| LLUC06_RS12030 (LLUC06_2339) | - | 2397917..2398726 (-) | 810 | WP_014570791.1 | metal ABC transporter permease | - |
| LLUC06_RS12035 (LLUC06_2340) | - | 2398719..2399456 (-) | 738 | WP_012898617.1 | metal ABC transporter ATP-binding protein | - |
| LLUC06_RS12040 (LLUC06_2341) | - | 2399633..2400475 (-) | 843 | WP_081213761.1 | metal ABC transporter substrate-binding protein | - |
| LLUC06_RS12045 (LLUC06_2342) | - | 2400472..2400909 (-) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| LLUC06_RS12050 (LLUC06_2343) | comGG | 2400990..2401274 (-) | 285 | WP_017865155.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| LLUC06_RS12055 (LLUC06_2344) | comGF | 2401313..2401759 (-) | 447 | WP_058203710.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LLUC06_RS12060 (LLUC06_2345) | comGE | 2401722..2402018 (-) | 297 | WP_033900709.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| LLUC06_RS12065 (LLUC06_2346) | comGD | 2401990..2402421 (-) | 432 | WP_012898621.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LLUC06_RS12070 (LLUC06_2347) | comGC | 2402381..2402764 (-) | 384 | WP_012898622.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LLUC06_RS12075 (LLUC06_2348) | comGB | 2402778..2403851 (-) | 1074 | WP_081213814.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LLUC06_RS12080 (LLUC06_2349) | comGA | 2403745..2404682 (-) | 938 | Protein_2349 | competence type IV pilus ATPase ComGA | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11048.89 Da Isoelectric Point: 5.6957
>NTDB_id=183095 LLUC06_RS12060 WP_033900709.1 2401722..2402018(-) (comGE) [Lactococcus lactis subsp. lactis strain UC06]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMQLELQS
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMQLELQS
Nucleotide
Download Length: 297 bp
>NTDB_id=183095 LLUC06_RS12060 WP_033900709.1 2401722..2402018(-) (comGE) [Lactococcus lactis subsp. lactis strain UC06]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCATTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCAACTTGAACTTCAAAGTTAA
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCATTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCAACTTGAACTTCAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Lactococcus lactis subsp. cremoris KW2 |
67.01 |
98.98 |
0.663 |