Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLUC06_RS12065 Genome accession   NZ_CP015902
Coordinates   2401990..2402421 (-) Length   143 a.a.
NCBI ID   WP_012898621.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2396990..2407421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS12025 (LLUC06_2338) - 2397013..2397879 (+) 867 WP_058203713.1 RluA family pseudouridine synthase -
  LLUC06_RS12030 (LLUC06_2339) - 2397917..2398726 (-) 810 WP_014570791.1 metal ABC transporter permease -
  LLUC06_RS12035 (LLUC06_2340) - 2398719..2399456 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  LLUC06_RS12040 (LLUC06_2341) - 2399633..2400475 (-) 843 WP_081213761.1 metal ABC transporter substrate-binding protein -
  LLUC06_RS12045 (LLUC06_2342) - 2400472..2400909 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  LLUC06_RS12050 (LLUC06_2343) comGG 2400990..2401274 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLUC06_RS12055 (LLUC06_2344) comGF 2401313..2401759 (-) 447 WP_058203710.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLUC06_RS12060 (LLUC06_2345) comGE 2401722..2402018 (-) 297 WP_033900709.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLUC06_RS12065 (LLUC06_2346) comGD 2401990..2402421 (-) 432 WP_012898621.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLUC06_RS12070 (LLUC06_2347) comGC 2402381..2402764 (-) 384 WP_012898622.1 competence type IV pilus major pilin ComGC Machinery gene
  LLUC06_RS12075 (LLUC06_2348) comGB 2402778..2403851 (-) 1074 WP_081213814.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLUC06_RS12080 (LLUC06_2349) comGA 2403745..2404682 (-) 938 Protein_2349 competence type IV pilus ATPase ComGA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16546.59 Da        Isoelectric Point: 9.6891

>NTDB_id=183096 LLUC06_RS12065 WP_012898621.1 2401990..2402421(-) (comGD) [Lactococcus lactis subsp. lactis strain UC06]
MIRIKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=183096 LLUC06_RS12065 WP_012898621.1 2401990..2402421(-) (comGD) [Lactococcus lactis subsp. lactis strain UC06]
ATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACTACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

67.133

100

0.671
  comYD Streptococcus gordonii str. Challis substr. CH1

39.007

98.601

0.385
  comYD Streptococcus mutans UA140

40.625

89.51

0.364
  comYD Streptococcus mutans UA159

40.625

89.51

0.364

Multiple sequence alignment