Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LL158_RS02095 | Genome accession | NZ_CP015894 |
| Coordinates | 413266..413655 (+) | Length | 129 a.a. |
| NCBI ID | WP_015082043.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain 158 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 408266..418655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL158_RS02070 (LL158_0392) | pepA | 409125..410192 (-) | 1068 | WP_011675458.1 | glutamyl aminopeptidase | - |
| LL158_RS02075 (LL158_0393) | - | 410295..410579 (+) | 285 | WP_011675459.1 | hypothetical protein | - |
| LL158_RS02080 (LL158_0394) | - | 410624..410941 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LL158_RS02085 (LL158_0395) | ytpR | 411047..411673 (+) | 627 | WP_015082041.1 | YtpR family tRNA-binding protein | - |
| LL158_RS02090 (LL158_0396) | nox | 411835..413175 (+) | 1341 | WP_015082042.1 | H2O-forming NADH oxidase | - |
| LL158_RS02095 (LL158_0397) | ssbB | 413266..413655 (+) | 390 | WP_015082043.1 | single-stranded DNA-binding protein | Machinery gene |
| LL158_RS02100 (LL158_0398) | groES | 413774..414058 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LL158_RS02105 (LL158_0399) | groL | 414145..415773 (+) | 1629 | WP_011675465.1 | chaperonin GroEL | - |
| LL158_RS02110 (LL158_0400) | - | 415825..416637 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| LL158_RS02115 (LL158_0401) | - | 416827..418254 (-) | 1428 | WP_011675468.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14683.78 Da Isoelectric Point: 6.9865
>NTDB_id=182817 LL158_RS02095 WP_015082043.1 413266..413655(+) (ssbB) [Lactococcus cremoris strain 158]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAINRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YSDKNEQKHCITEILGLSYDLLESRATLALRESAINFEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAINRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YSDKNEQKHCITEILGLSYDLLESRATLALRESAINFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=182817 LL158_RS02095 WP_015082043.1 413266..413655(+) (ssbB) [Lactococcus cremoris strain 158]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAATCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATTCTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTATAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAATCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATTCTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTATAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
95.349 |
100 |
0.953 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |