Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BSA145_RS16790 Genome accession   NZ_CP015607
Coordinates   3223825..3225075 (+) Length   416 a.a.
NCBI ID   WP_075623099.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3218825..3230075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS16765 (BSA145_16420) ymfI 3220248..3220976 (+) 729 WP_075623097.1 elongation factor P 5-aminopentanone reductase -
  BSA145_RS16770 (BSA145_16425) - 3221050..3221307 (+) 258 WP_056766502.1 DUF3243 domain-containing protein -
  BSA145_RS16775 (BSA145_16430) - 3221439..3222230 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BSA145_RS16780 (BSA145_16435) - 3222254..3223153 (+) 900 WP_075623098.1 helix-turn-helix domain-containing protein -
  BSA145_RS16785 (BSA145_16440) pgsA 3223227..3223808 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BSA145_RS16790 (BSA145_16445) cinA 3223825..3225075 (+) 1251 WP_075623099.1 competence/damage-inducible protein A Machinery gene
  BSA145_RS16795 (BSA145_16450) recA 3225253..3226296 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  BSA145_RS16800 (BSA145_16455) - 3226440..3227615 (+) 1176 WP_075623100.1 serine hydrolase domain-containing protein -
  BSA145_RS16805 (BSA145_16460) rny 3227849..3229411 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45493.60 Da        Isoelectric Point: 4.7786

>NTDB_id=181347 BSA145_RS16790 WP_075623099.1 3223825..3225075(+) (cinA) [Bacillus safensis strain U14-5]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDNTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHVHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTTDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=181347 BSA145_RS16790 WP_075623099.1 3223825..3225075(+) (cinA) [Bacillus safensis strain U14-5]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTTTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCACGCTTGGCAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACTGGCCGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GTTTCGGGATGGCACCGGGTATGTTTGTTCAAGAAGACAATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAATGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGTGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGGGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGACAGACCAGACGGACGTATTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus mutans UA159

47.837

100

0.478
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment