Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BW242_RS07920 Genome accession   NZ_CP019359
Coordinates   1161787..1162302 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain XH990     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156787..1167302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW242_RS07875 (BW242_08635) csrA 1157372..1157557 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BW242_RS07905 (BW242_08665) yqaB 1159017..1159583 (+) 567 WP_021557118.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BW242_RS07910 (BW242_08670) yqaA 1159580..1160008 (+) 429 WP_001287454.1 YqaA family protein -
  BW242_RS07915 (BW242_08675) gshA 1160081..1161637 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BW242_RS07920 (BW242_08680) luxS 1161787..1162302 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BW242_RS07925 (BW242_08685) emrB 1162366..1163904 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BW242_RS07930 (BW242_08690) emrA 1163921..1165093 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BW242_RS07935 (BW242_08695) emrR 1165220..1165750 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BW242_RS07940 (BW242_08700) ygaH 1165841..1166176 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BW242_RS07945 (BW242_08705) ygaZ 1166166..1166903 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=180286 BW242_RS07920 WP_001130211.1 1161787..1162302(+) (luxS) [Escherichia coli strain XH990]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180286 BW242_RS07920 WP_001130211.1 1161787..1162302(+) (luxS) [Escherichia coli strain XH990]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment