Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GFC30_RS01100 | Genome accession | NZ_CP015438 |
| Coordinates | 208635..209129 (+) | Length | 164 a.a. |
| NCBI ID | WP_066322337.1 | Uniprot ID | A0A160F2Z3 |
| Organism | Anoxybacteroides amylolyticum strain DSM 15939 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 199022..236716 | 208635..209129 | within | 0 |
Gene organization within MGE regions
Location: 199022..236716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC30_RS01050 (GFC30_213) | noc | 199743..200591 (+) | 849 | WP_066322309.1 | nucleoid occlusion protein | - |
| GFC30_RS01055 (GFC30_214) | - | 200717..201478 (+) | 762 | WP_066322311.1 | ParA family protein | - |
| GFC30_RS01060 (GFC30_215) | - | 201471..202325 (+) | 855 | WP_066322313.1 | ParB/RepB/Spo0J family partition protein | - |
| GFC30_RS01065 (GFC30_216) | - | 202373..203074 (+) | 702 | WP_066326993.1 | DUF554 domain-containing protein | - |
| GFC30_RS01070 (GFC30_217) | yyaC | 203119..203739 (-) | 621 | WP_066322315.1 | spore protease YyaC | - |
| GFC30_RS01075 (GFC30_218) | - | 203950..204807 (+) | 858 | WP_409978504.1 | mechanosensitive ion channel family protein | - |
| GFC30_RS01080 (GFC30_219) | - | 204820..205014 (+) | 195 | WP_066322324.1 | DUF951 domain-containing protein | - |
| GFC30_RS01085 (GFC30_220) | - | 205036..207045 (+) | 2010 | WP_066322326.1 | molybdopterin-dependent oxidoreductase | - |
| GFC30_RS01090 (GFC30_221) | ychF | 207116..208216 (+) | 1101 | WP_066322331.1 | redox-regulated ATPase YchF | - |
| GFC30_RS01095 (GFC30_222) | rpsF | 208322..208609 (+) | 288 | WP_066322334.1 | 30S ribosomal protein S6 | - |
| GFC30_RS01100 (GFC30_223) | ssbA | 208635..209129 (+) | 495 | WP_066322337.1 | single-stranded DNA-binding protein | Machinery gene |
| GFC30_RS01105 (GFC30_224) | rpsR | 209191..209427 (+) | 237 | WP_027408127.1 | 30S ribosomal protein S18 | - |
| GFC30_RS01110 (GFC30_225) | - | 209488..210417 (+) | 930 | WP_066322340.1 | YybS family protein | - |
| GFC30_RS01115 (GFC30_226) | - | 210450..212423 (+) | 1974 | WP_066322342.1 | DHH family phosphoesterase | - |
| GFC30_RS01120 (GFC30_227) | rplI | 212420..212869 (+) | 450 | WP_066322345.1 | 50S ribosomal protein L9 | - |
| GFC30_RS01125 (GFC30_228) | dnaB | 212962..214326 (+) | 1365 | WP_066322348.1 | replicative DNA helicase | - |
| GFC30_RS01130 (GFC30_229) | - | 214468..215754 (+) | 1287 | WP_066322349.1 | adenylosuccinate synthase | - |
| GFC30_RS01135 (GFC30_230) | yycF | 215951..216661 (+) | 711 | WP_066322351.1 | response regulator YycF | - |
| GFC30_RS01140 (GFC30_231) | walK | 216672..218504 (+) | 1833 | WP_066322353.1 | cell wall metabolism sensor histidine kinase WalK | - |
| GFC30_RS01145 (GFC30_232) | - | 218485..219831 (+) | 1347 | WP_066322356.1 | YycH family regulatory protein | - |
| GFC30_RS01150 (GFC30_233) | - | 219818..220603 (+) | 786 | WP_066322360.1 | two-component system regulatory protein YycI | - |
| GFC30_RS01155 (GFC30_234) | - | 220612..221400 (+) | 789 | WP_066326999.1 | MBL fold metallo-hydrolase | - |
| GFC30_RS01160 (GFC30_235) | - | 221509..222726 (+) | 1218 | WP_066322363.1 | S1C family serine protease | - |
| GFC30_RS16295 (GFC30_236) | - | 222831..222992 (+) | 162 | WP_084256134.1 | CxxH/CxxC protein | - |
| GFC30_RS01165 (GFC30_238) | rlmH | 223077..223547 (+) | 471 | WP_409978505.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| GFC30_RS01170 (GFC30_237) | - | 223491..225203 (-) | 1713 | WP_158512119.1 | recombinase family protein | - |
| GFC30_RS17380 (GFC30_239) | - | 225217..225381 (-) | 165 | WP_157075839.1 | hypothetical protein | - |
| GFC30_RS01175 (GFC30_240) | - | 225445..225951 (-) | 507 | WP_066322370.1 | helix-turn-helix domain-containing protein | - |
| GFC30_RS17730 (GFC30_241) | - | 226093..226278 (+) | 186 | WP_066366162.1 | helix-turn-helix domain-containing protein | - |
| GFC30_RS01180 (GFC30_242) | - | 226800..227780 (+) | 981 | WP_148660346.1 | replication initiation factor domain-containing protein | - |
| GFC30_RS01185 (GFC30_243) | - | 228421..229650 (+) | 1230 | WP_066322375.1 | IS256 family transposase | - |
| GFC30_RS01190 (GFC30_244) | - | 230185..232953 (+) | 2769 | WP_066322377.1 | class I SAM-dependent DNA methyltransferase | - |
| GFC30_RS01195 (GFC30_245) | - | 232950..235034 (+) | 2085 | WP_066322379.1 | DEAD/DEAH box helicase | - |
| GFC30_RS01200 | - | 235412..236218 (+) | 807 | WP_202967979.1 | GIY-YIG nuclease family protein | - |
| GFC30_RS17735 (GFC30_248) | - | 236466..236651 (+) | 186 | WP_066366158.1 | GrpB family protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18436.33 Da Isoelectric Point: 4.8215
>NTDB_id=179756 GFC30_RS01100 WP_066322337.1 208635..209129(+) (ssbA) [Anoxybacteroides amylolyticum strain DSM 15939]
MINRVILVGRLTRDPELRYTPNGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVVADSVQFLEPRGSTEQRGTATGGYYGEPYPFGQNQNQRHTPDQNFSRIDEDPFAHDGQPIDISDD
DLPF
MINRVILVGRLTRDPELRYTPNGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVVADSVQFLEPRGSTEQRGTATGGYYGEPYPFGQNQNQRHTPDQNFSRIDEDPFAHDGQPIDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=179756 GFC30_RS01100 WP_066322337.1 208635..209129(+) (ssbA) [Anoxybacteroides amylolyticum strain DSM 15939]
ATGATTAATCGCGTAATTCTTGTAGGGCGACTTACAAGAGACCCAGAATTGCGCTATACTCCAAATGGGGTTGCTGTTGC
CACATTTACGTTAGCGGTCAATCGCCCGTTTACAAACCAACAGGGTGAGCGCGAAGCAGATTTCATTAACTGCGTCGTTT
GGCGCCGTCCTGCAGAAAATGTCGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTGGACGGACGGTTGCAAACGAGA
AGTTATGAAGGTCAAGACGGAAAACGTGTGTACGTAACCGAAGTGGTTGCTGATAGTGTTCAATTTCTTGAACCGAGAGG
TAGCACAGAACAACGTGGTACAGCAACAGGTGGCTACTACGGGGAGCCATATCCATTTGGACAAAATCAGAACCAACGAC
ACACGCCTGATCAAAATTTCAGTCGCATTGATGAAGATCCGTTTGCTCATGATGGGCAACCGATCGACATCTCGGATGAC
GACTTGCCTTTTTAA
ATGATTAATCGCGTAATTCTTGTAGGGCGACTTACAAGAGACCCAGAATTGCGCTATACTCCAAATGGGGTTGCTGTTGC
CACATTTACGTTAGCGGTCAATCGCCCGTTTACAAACCAACAGGGTGAGCGCGAAGCAGATTTCATTAACTGCGTCGTTT
GGCGCCGTCCTGCAGAAAATGTCGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTGGACGGACGGTTGCAAACGAGA
AGTTATGAAGGTCAAGACGGAAAACGTGTGTACGTAACCGAAGTGGTTGCTGATAGTGTTCAATTTCTTGAACCGAGAGG
TAGCACAGAACAACGTGGTACAGCAACAGGTGGCTACTACGGGGAGCCATATCCATTTGGACAAAATCAGAACCAACGAC
ACACGCCTGATCAAAATTTCAGTCGCATTGATGAAGATCCGTTTGCTCATGATGGGCAACCGATCGACATCTCGGATGAC
GACTTGCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
67.429 |
100 |
0.72 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
100 |
0.622 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
64.634 |
0.402 |
| ssb | Neisseria gonorrhoeae MS11 |
36.313 |
100 |
0.396 |
| ssb | Neisseria meningitidis MC58 |
35.359 |
100 |
0.39 |
| ssb | Glaesserella parasuis strain SC1401 |
34.27 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
34.078 |
100 |
0.372 |